CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_BUCAP (Spermidine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=speE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  219 NNPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N  +W  + H        + +IL++ K++Y ++++F++   G+++ +DG+VQ TEKDE  Y EM+ H+P+      K             REI RH S+E I + E
Sbjct:    3 NEKIWHEKLHRHVGQYFSIDKILYQKKNKYHDIIIFQNSIMGRIMAIDGVVQTTEKDEFIYHEMLTHVPIFYHGLIKNVLIVGGGDGGILREICRHKSIENITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_PYRKO (Probable spermidine synthase OS=Pyrococcus kodakaraensis GN=speE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  237 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVE 503
            G     KVK  LF+ ++EYQ + ++E+  +GK+LVLDG VQL E  E +Y E++ H  + + P+P+             RE+ RHD+VE
Sbjct:   17 GYGVGFKVKRRLFETQTEYQRLEIYETEGFGKLLVLDGTVQLVEVGEESYHEVLVHPVMLAHPNPRKVLVIGGGDGGTLREVLRHDTVE 105          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_HAMD5 (Spermidine synthase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=speE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 32/103 (31.07%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  228 MWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +W  + HS       +KE+L++ K+++Q++++F++  +G+V+ L+ +VQ TE+DE  Y EM+ H+PL +    K             RE+ RH  V+ I + E
Sbjct:    6 LWYEKLHSSFGQYFSIKEVLYRDKTDHQDLIIFDTEEFGRVMALNHVVQTTERDEFIYHEMMTHVPLLAHGDAKKVLIIGGGDGGILREVCRHAGVKEIIMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_EUBE2 (Spermidine synthase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=speE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  231 WPGEAHS------LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            W  E HS      ++V++ LF G+S+YQ + VF+S  +GK L L+G V  +E+D   Y EM+ H+P+   P  K             +E+ ++D++E IDI E
Sbjct:    4 WFSELHSPHVKFDIRVEKQLFSGESDYQRIDVFQSPEFGKFLTLNGSVIFSEQDCFIYNEMVVHVPMSVHPDVKNVLIIGGGDGGVSKELLQYDNIENIDIVE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOBA (Spermidine synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=speE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 33/104 (31.73%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  228 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +W  E H      S++V   L+  +S++Q + + ES  +G+   LDG++ +TEKDE  Y +MI H+P+ + P+ K             RE++R+ ++E ID+ E
Sbjct:    3 LWYTEKHTEDVKFSIRVDRELYTEQSKFQRIDILESKEFGRFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKKVLVIGAGDGGTIRELTRYKTIEKIDMVE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SILST (Spermidine synthase OS=Silicibacter sp. (strain TM1040) GN=speE PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 3
Query:  243 AHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            A SL+V E+ +  K+E+Q + VF++  +G+VL LD +VQ TE D   Y EM+ H+P+ +  + K             RE+ +H SVE + + E
Sbjct:   16 AQSLRVSEMYYDSKTEHQRLKVFQNGTFGRVLTLDDVVQTTEGDNFIYHEMLTHVPILAHGAAKRVLIIGGGDGGIAREVLKHASVEHVTMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE1_PSEAE (Spermidine synthase 1 OS=Pseudomonas aeruginosa GN=speE1 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 29/102 (28.43%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  216 FNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +   ++ G      +  +L + ++E+Q +++FE+   G+V+ LDG++Q TE DE  Y EM+ H+P+ +  + +             RE+++H SVE I + E
Sbjct:    4 YQETLYQGYGQRFSIDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVE 105          
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPEE_BUCAP2.685e-1131.13Spermidine synthase OS=Buchnera aphidicola subsp. ... [more]
SPEE_PYRKO4.580e-1138.20Probable spermidine synthase OS=Pyrococcus kodakar... [more]
SPEE_HAMD55.982e-1131.07Spermidine synthase OS=Hamiltonella defensa subsp.... [more]
SPEE_EUBE25.982e-1134.95Spermidine synthase OS=Eubacterium eligens (strain... [more]
SPEE_CLOBA5.982e-1131.73Spermidine synthase OS=Clostridium botulinum (stra... [more]
SPEE_SILST7.813e-1135.48Spermidine synthase OS=Silicibacter sp. (strain TM... [more]
SPEE1_PSEAE7.813e-1128.43Spermidine synthase 1 OS=Pseudomonas aeruginosa GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
back to top