CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_MOOTA (Spermidine synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=speE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  210 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            ++F+    P  A S+++ + L   K+ YQE+ V ++ AYG++L+LD I+Q T KDE  Y EMIAH+PL + P+P+T            REI +H S+E + + E
Sbjct:    4 IWFSELQTPDLAISVRLNQTLHHEKTPYQELAVVDTEAYGRMLLLDNIIQTTVKDEFFYHEMIAHVPLNTHPNPRTALVIGGGDGGVVREIVKHPSIEKVTLVE 107          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP7 (Spermidine synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=speE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  219 NNPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +NP+W    H        V  +L+  K+++Q++++F++ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +  + K             RE+SRH S+E I + E
Sbjct:    3 DNPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVSRHRSIETITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_KLEP3 (Spermidine synthase OS=Klebsiella pneumoniae (strain 342) GN=speE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.987e-14
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  219 NNPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +NP+W    H        V  +L+  K+++Q++++F++ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +  + K             RE+SRH S+E I + E
Sbjct:    3 DNPLWHETLHDHFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVSRHRSIETITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ALKOO (Spermidine synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=speE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  228 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +W  E H      S+KV   L+ G+SE+Q + VFES  +GK   LDG++ +TEKDE  Y +MI H+P+ + P  K             RE++R++++E ID+ E
Sbjct:    3 LWYTEQHTEDVRFSIKVDNQLYSGQSEFQRIDVFESKEFGKFFTLDGLMMVTEKDEFIYHDMITHIPMATNPKIKNVLVIGAGDGGTVRELTRYETIENIDMVE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_THEPX (Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.389e-14
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  249 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            SLKVKE L   K+ YQ + + ++  +G+VL LDGI+Q TEKDE  Y EMI H+PL +  +PK+            RE+ +H SVE + + E
Sbjct:   16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_THEP3 (Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.389e-14
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  249 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            SLKVKE L   K+ YQ + + ++  +G+VL LDGI+Q TEKDE  Y EMI H+PL +  +PK+            RE+ +H SVE + + E
Sbjct:   16 SLKVKETLVVEKTPYQHLAILDTYQFGRVLTLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKSVLIVGGGDGGSVREVLKHPSVERVVLAE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ERWT9 (Spermidine synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=speE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.426e-14
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H+       V +I+++ K+++Q++++FE+ A G+V+ LDG+VQ TE+DE  Y EM+ H+PL +  +PK             RE+ RH ++E I + E
Sbjct:    4 NEMWYETLHTGFGQYFSVDKIIYREKTDHQDLVIFENAALGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGAPKRVLIIGGGDGAMLREVCRHKNIEQITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPS (Spermidine synthase OS=Clostridium perfringens (strain SM101 / Type A) GN=speE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  228 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +W  E H      S+KV E L+ GKS++Q + VF+S  +G    LDG++ +TEKDE  Y +MI H+P+ + P+ K             RE++R++++E ID+ E
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPE (Spermidine synthase OS=Clostridium perfringens GN=speE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  228 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +W  E H      S+KV E L+ GKS++Q + VF+S  +G    LDG++ +TEKDE  Y +MI H+P+ + P+ K             RE++R++++E ID+ E
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOP1 (Spermidine synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=speE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  228 MWPGEAH------SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +W  E H      S+KV E L+ GKS++Q + VF+S  +G    LDG++ +TEKDE  Y +MI H+P+ + P+ K             RE++R++++E ID+ E
Sbjct:    3 LWYTEEHTDKVRFSIKVDEQLYSGKSDFQRIDVFKSQEFGTFFTLDGLMMVTEKDEFIYHDMIVHVPMATNPNIKNVLVIGAGDGGTVRELTRYETIEKIDMVE 106          
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPEE_MOOTA1.521e-1438.46Spermidine synthase OS=Moorella thermoacetica (str... [more]
SPEE_KLEP71.987e-1434.91Spermidine synthase OS=Klebsiella pneumoniae subsp... [more]
SPEE_KLEP31.987e-1434.91Spermidine synthase OS=Klebsiella pneumoniae (stra... [more]
SPEE_ALKOO2.595e-1437.50Spermidine synthase OS=Alkaliphilus oremlandii (st... [more]
SPEE_THEPX3.389e-1442.86Spermidine synthase OS=Thermoanaerobacter sp. (str... [more]
SPEE_THEP33.389e-1442.86Spermidine synthase OS=Thermoanaerobacter pseudeth... [more]
SPEE_ERWT94.426e-1435.24Spermidine synthase OS=Erwinia tasmaniensis (strai... [more]
SPEE_CLOPS5.780e-1436.54Spermidine synthase OS=Clostridium perfringens (st... [more]
SPEE_CLOPE5.780e-1436.54Spermidine synthase OS=Clostridium perfringens GN=... [more]
SPEE_CLOP15.780e-1436.54Spermidine synthase OS=Clostridium perfringens (st... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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