CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOTH (Spermidine synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=speE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.550e-14
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 3 
Query:  210 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            ++F     P    + K K+ L   K+EYQE+ V E+  +G++L+LDGI+Q T  DE  Y EMIAH+PL +  +PK             REI +H S+E   +CE
Sbjct:    3 LWFTEYQTPTLGITCKTKKTLHSEKTEYQELAVIETEQFGRMLLLDGIIQTTVADEFVYHEMIAHVPLFTHKNPKKALVVGGGDGGSIREIVKHPSIEKAVLCE 106
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ENT38 (Spermidine synthase OS=Enterobacter sp. (strain 638) GN=speE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 3 
Query:  219 NNPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +N +W    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH S+E I + E
Sbjct:    3 DNTVWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVSRHKSIETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALTY (Spermidine synthase OS=Salmonella typhimurium GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALTI (Spermidine synthase OS=Salmonella typhi GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALSV (Spermidine synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALPK (Spermidine synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALPC (Spermidine synthase OS=Salmonella paratyphi C (strain RKS4594) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALPB (Spermidine synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALPA (Spermidine synthase OS=Salmonella paratyphi A GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALNS (Spermidine synthase OS=Salmonella newport (strain SL254) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPEE_CLOTH7.550e-1438.46Spermidine synthase OS=Clostridium thermocellum (s... [more]
SPEE_ENT381.288e-1334.91Spermidine synthase OS=Enterobacter sp. (strain 63... [more]
SPEE_SALTY2.197e-1335.24Spermidine synthase OS=Salmonella typhimurium GN=s... [more]
SPEE_SALTI2.197e-1335.24Spermidine synthase OS=Salmonella typhi GN=speE PE... [more]
SPEE_SALSV2.197e-1335.24Spermidine synthase OS=Salmonella schwarzengrund (... [more]
SPEE_SALPK2.197e-1335.24Spermidine synthase OS=Salmonella paratyphi A (str... [more]
SPEE_SALPC2.197e-1335.24Spermidine synthase OS=Salmonella paratyphi C (str... [more]
SPEE_SALPB2.197e-1335.24Spermidine synthase OS=Salmonella paratyphi B (str... [more]
SPEE_SALPA2.197e-1335.24Spermidine synthase OS=Salmonella paratyphi A GN=s... [more]
SPEE_SALNS2.197e-1335.24Spermidine synthase OS=Salmonella newport (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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