CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALHS (Spermidine synthase OS=Salmonella heidelberg (strain SL476) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALG2 (Spermidine synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALEP (Spermidine synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALDC (Spermidine synthase OS=Salmonella dublin (strain CT_02021853) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALCH (Spermidine synthase OS=Salmonella choleraesuis GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALAR (Spermidine synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SALA4 (Spermidine synthase OS=Salmonella agona (strain SL483) GN=speE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3 
Query:  222 NPMWPGEAHS-----LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            N MW    H        V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:    4 NTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_THENN (Spermidine synthase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=speE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 3 
Query:  252 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +K+  +++ G+S+ Q + +FE+   G V  LDGI   TEKDE  Y EM+AH+P+   P+PK             RE+ +HDSVE   +CE
Sbjct:   32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCE 121
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_THEMA (Spermidine synthase OS=Thermotoga maritima GN=speE PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 3 
Query:  252 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +K+  +++ G+S+ Q + +FE+   G V  LDGI   TEKDE  Y EM+AH+P+   P+PK             RE+ +HDSVE   +CE
Sbjct:   32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCE 121
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOPH (Spermidine synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=speE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 3 
Query:  249 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            S+K+KE L   +SE+Q + + E+  YG+VLVLDG + +TEKDE  Y EMI H+P+   P+ +             RE++++D++E ID+ E
Sbjct:   16 SIKMKEQLVSVESEFQRIDIIETYEYGRVLVLDGEMMITEKDEFIYHEMITHVPMAVHPNIRNVLVIGAGDGGTIRELTKYDTIEHIDMVE 106
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPEE_SALHS2.197e-1335.24Spermidine synthase OS=Salmonella heidelberg (stra... [more]
SPEE_SALG22.197e-1335.24Spermidine synthase OS=Salmonella gallinarum (stra... [more]
SPEE_SALEP2.197e-1335.24Spermidine synthase OS=Salmonella enteritidis PT4 ... [more]
SPEE_SALDC2.197e-1335.24Spermidine synthase OS=Salmonella dublin (strain C... [more]
SPEE_SALCH2.197e-1335.24Spermidine synthase OS=Salmonella choleraesuis GN=... [more]
SPEE_SALAR2.197e-1335.24Spermidine synthase OS=Salmonella arizonae (strain... [more]
SPEE_SALA42.197e-1335.24Spermidine synthase OS=Salmonella agona (strain SL... [more]
SPEE_THENN2.869e-1338.89Spermidine synthase OS=Thermotoga neapolitana (str... [more]
SPEE_THEMA2.869e-1338.89Spermidine synthase OS=Thermotoga maritima GN=speE... [more]
SPEE_CLOPH2.869e-1339.56Spermidine synthase OS=Clostridium phytofermentans... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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