CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOSM (Spermidine synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOSE (Spermidine synthase OS=Escherichia coli (strain SE11) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOLU (Spermidine synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOLI (Spermidine synthase OS=Escherichia coli (strain K12) GN=speE PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOLC (Spermidine synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOL6 (Spermidine synthase OS=Escherichia coli O6 GN=speE PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOL5 (Spermidine synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOK1 (Spermidine synthase OS=Escherichia coli O1:K1 / APEC GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOHS (Spermidine synthase OS=Escherichia coli O9:H4 (strain HS) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECODH (Spermidine synthase OS=Escherichia coli (strain K12 / DH10B) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPEE_ECOSM1.424e-1237.50Spermidine synthase OS=Escherichia coli (strain SM... [more]
SPEE_ECOSE1.424e-1237.50Spermidine synthase OS=Escherichia coli (strain SE... [more]
SPEE_ECOLU1.424e-1237.50Spermidine synthase OS=Escherichia coli O17:K52:H1... [more]
SPEE_ECOLI1.424e-1237.50Spermidine synthase OS=Escherichia coli (strain K1... [more]
SPEE_ECOLC1.424e-1237.50Spermidine synthase OS=Escherichia coli (strain AT... [more]
SPEE_ECOL61.424e-1237.50Spermidine synthase OS=Escherichia coli O6 GN=speE... [more]
SPEE_ECOL51.424e-1237.50Spermidine synthase OS=Escherichia coli O6:K15:H31... [more]
SPEE_ECOK11.424e-1237.50Spermidine synthase OS=Escherichia coli O1:K1 / AP... [more]
SPEE_ECOHS1.424e-1237.50Spermidine synthase OS=Escherichia coli O9:H4 (str... [more]
SPEE_ECODH1.424e-1237.50Spermidine synthase OS=Escherichia coli (strain K1... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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