CX294966

Overview
NameCX294966
Unique NameCX294966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3541 contig Ccv1_Contig3541:53..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294966 vs. ExPASy Swiss-Prot
Match: KIN11_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN11 OS=Arabidopsis thaliana GN=KIN11 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = 3 
Query:  336 NSNGGGDDRPTLLHGKYELGRMLGHGTFAKVYLARNLQTGKSMAXXXXXXXXXXXXXXXEQIKREISVMKMVKHKHIVELHEVMASKSKIYFAMDLVKGGEL 641
            +SN  G++    +   Y+LG+ LG G+F KV +A ++ TG  +A               E+++REI ++++  H HI+  +EV+ + S IY  M+ VK GEL
Sbjct:    4 SSNRFGNNGVESILPNYKLGKTLGIGSFGKVKIAEHVVTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRQYEVIETTSDIYVVMEYVKSGEL 105
The following BLAST results are available for this feature:
BLAST of CX294966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
KIN11_ARATH9.324e-1133.33SNF1-related protein kinase catalytic subunit alph... [more]

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Properties
Property NameValue
Genbank descriptionC05065B05SK DroRLeaf1 Citrus clementina cDNA clone C05065B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294966 ID=CX294966; Name=CX294966; organism=Citrus clementina; type=EST; length=642bp
CTCCCGGTAAACCCATCGATAAGCCTTTGATCAATAGCAGCAAATCAAAA
TCCTTCTCGTCTCCCCCCAAGAAAAAATAAATAAGCAAACACTACAAGCC
CCTTCAGGGAATGCAGAGAGATGAGAGGACCTTCGTGGAGATTGCCTGAG
CTGTGTTTACGTGCCCAGCGGTGCGTCGGCGGCCGTAATTGCCACCGGAA
ACACGTCGAAGACGGGTGATCCTCAACCACCACCACAACACAAAAGAAAA
CCTGAAAGAATTATTTAATTAGCTAAACTTGGTACATATATACGTATAAA
AGGAAAAAAAAGACCGCGTGGAGATGGCTACATCAAACAGTAACGGCGGA
GGCGATGACAGGCCGACGTTGCTACATGGGAAATACGAGCTGGGGCGTAT
GCTAGGCCACGGAACCTTCGCGAAGGTGTACCTGGCAAGAAATTTGCAGA
CGGGGAAAAGCATGGCCATGAAAGTTGTTGGTAAAGACAAGGTTATCAAG
GTGGGCATGATGGAGCAAATCAAGCGTGAAATCTCTGTCATGAAGATGGT
GAAGCACAAGCACATAGTTGAGCTACACGAAGTCATGGCAAGTAAGTCCA
AGATTTACTTCGCCATGGACCTCGTCAAAGGCGGCGAGCTGT
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