CX295738

Overview
NameCX295738
Unique NameCX295738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 52/192 (27.08%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   22 IYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            I+RSL P   +P     ++  F+ +    Y+  +A ++A + +++++        +++ +   LG+ K  V+++  PN  ++ I  LG+++ G + S AN    VSE+ KQV+ S  + +IT    ++KVK L LP ++LG +                 + DL+E      D  +  + QTD  AL +SSG
Sbjct:   12 IFRSLYPSVPIPD--KLTLPEFVLQGVEEYTENVAFVEAVTGKAVTYGDVVRDTKRLAKALTSLGLRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEASGARGIITDATNYEKVKSLGLPVIVLGEE----------KIEGAVNWKDLLEAGDKCGDTDNEEILQTDLCALPFSSG 191          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   16 DGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            D I+RS  P   +P      +  + F N + ++S+  LID  +D   ++++ +    KV+     LGI +KD ++I  PN  +F   F+G   +GAI++ AN ++T +E+ KQ K S+ K+VIT      KVK   +       ++                F +LI+      +IPDV ++  D  AL YSSG
Sbjct:   12 DLIFRSKLPDIYIPKH--LPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAI-------ENDLKVICVDSAPEGCVHFSELIQ--SDEHEIPDVKIQPDDVVALPYSSG 194          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 57/194 (29.38%), Postives = 96/194 (49.48%), Query Frame = 1
Query:   16 DGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            D I+RS  P   +P      +  + F N + +SS+  LI+  +D+  ++++ +    KV+     LGI +KD ++I  PNS +F   F+G   +GAI++ AN ++T +E+ KQ K S+ K++IT      KVK          S++                F +L +      +IP+V ++  D  AL YSSG
Sbjct:   14 DLIFRSKLPDIYIPKH--LPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELTCRKVAVGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQAKASSAKIIITQSCFVGKVKD-------YASENDVKVICIDSAPEGCLHFSELTQ--SDEHEIPEVKIQPDDVVALPYSSG 196          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   16 DGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            D I+RS  P   +P      +  + F N + ++S+  LID  +D   ++++ +    KV+     LGI +KD ++I  PN  +F   F+G   +GAI++ AN ++T +E+ KQ K S+ K+VIT      KVK   +       ++                F +LI+      +IPDV ++  D  AL YSSG
Sbjct:   12 DLIFRSKLPDIYIPKH--LPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVAVGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIVITQACFAGKVKDYAI-------ENDLKVICVDSVPEGCVHFSELIQ--SDEHEIPDVKIQPDDVVALPYSSG 194          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 1
Query:   19 GIYRSLRPPFVLPSDPSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGS--KDXXXXXXXXXXXXXXXXFHDLIE---LSGSVTDIPDVSVKQTDAAALLYSSG 597
            GIY S+ PP  LP+DPS ++V  LF R   +      L+DA +  ++S +  + +V  ++   R   G+ K  VVL+  PNS+ FP+ FL V+A GA+A+T N   + +E++ Q + +   LV+   +   ++  L  P VL+                      F  +++     G+ T +P V   Q DA A+LYSSG
Sbjct:   33 GIYSSIHPPVALPTDPSLTLVAHLFARLPLADPGAPTLVDAATASAVSRADLRRLVASLAAGLRRRHGVRKGSVVLLLLPNSVAFPVSFLAVLAAGAVATTMNPSSSPAEIAAQARATGACLVLASRDGAARLPPLAAPVVLVPEILDHSAAADDGDDDQRVFAAFRAMLDGGGGDGTETAVPVVG--QDDAVAILYSSG 230          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.050e-16
Identity = 56/194 (28.87%), Postives = 93/194 (47.94%), Query Frame = 1
Query:   16 DGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            D I+RS  P   +P+     +  ++F N + +++K  LI+  + E  +++       K++    +LG+ + DVV+I  PNS +  + FL    IGAI ++AN  +T +E+SKQ K S  KL++T     DK+K L    VL+ + D                F +L +      D     +   D  AL +SSG
Sbjct:   20 DVIFRSRLPDIYIPNH--LPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLAAGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAKLIVTQSRYVDKIKNLQNDGVLIVTTD------SDAIPENCLRFSELTQSEEPRVDSIPEKISPEDVVALPFSSG 205          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   13 RDGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVK 414
            +D I+RS  P   +P +    +  + F N + +SS+  LI+  +DE  +++  + I  +V      LGI + D ++I  PNS +F   FLG   IG+I++ AN  +T +E+ KQ K SN KL+IT     DKVK
Sbjct:   12 KDIIFRSKLPDIYIPKN--LPLHSYCFENISKFSSRPCLINGATDEIFTYADVELISRRVGSGLSKLGIKQGDTIMILLPNSPEFVFAFLGASFIGSISTMANPFFTSTEVIKQAKASNAKLIITQGCYVDKVK 143          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 64/196 (32.65%), Postives = 100/196 (51.02%), Query Frame = 1
Query:   25 YRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQ-FKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKV-KGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSG 597
            +RS R    LP+DP   +V FL   S  +S  +AL+DA +   ++F++ ++++    S    H + + K  V LI +PNS+ FP+  L  +++GA+ +TAN + T +E++KQV D+ P L  T  EL  K+ +  +L  VLL S                     + E+S +  D       V Q D A LLYSSG
Sbjct:   22 FRSRRADVPLPADPEVDVVSFLA--SRRHSGVVALVDAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVAALAAMSLGAVLTTANPLNTPAEIAKQVADARPVLAFTTRELLPKLPRAHDLRVVLLES------ARLPGDSSDPRIVATIEEISATTPDPARRKDRVTQDDPATLLYSSG 209          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 61/192 (31.77%), Postives = 91/192 (47.40%), Query Frame = 1
Query:   22 IYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            I+RS  P   +P+     +  + F   +S S K  LI   + +S ++ +   I  +V+     LGI K DV++I   NS +F   F+G   IGA+++TAN  YT  EL KQ+K S  KL+IT  +  DK+K L     L+ + +                F  LI    +      V +   DAAAL +SSG
Sbjct:   34 IFRSKLPDIDIPNH--LPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIITHSQYVDKLKNLGENLTLITTDE--------PTPENCLPFSTLITDDETNPFQETVDIGGDDAAALPFSSG 215          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.275e-15
Identity = 53/192 (27.60%), Postives = 91/192 (47.40%), Query Frame = 1
Query:   22 IYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            +++S  P   +P      +  + F+N + ++ +  LI   + ++ +++    I  K++    +LGI K DVV+I   NS  F   FL +  IGA+A+TAN  YT  E+ KQ   S  KL+IT     DK++  +      G+K                  H  +    + +D+P+V +   DA A+ +SSG
Sbjct:   26 VFKSKLPD--IPISNHLPLHSYCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSADFVFSFLAISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLRNHD------GAKLGEDFKVVTVDDPPENCLHFSVLSEANESDVPEVEIHPDDAVAMPFSSG 209          
The following BLAST results are available for this feature:
BLAST of CX295738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
4CLL1_ARATH1.736e-1627.084-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
4CL2_SOLTU1.736e-1629.904-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_TOBAC1.736e-1629.384-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL1_SOLTU1.736e-1629.904-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
4CLL3_ORYSJ2.960e-1631.004-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
4CL2_ARATH5.050e-1628.874-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CL_VANPL1.125e-1535.824-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CLL4_ORYSJ1.125e-1532.654-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
4CL3_ARATH1.469e-1531.774-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL2_SOYBN4.275e-1527.604-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC05075D04SK DroRLeaf1 Citrus clementina cDNA clone C05075D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295738 ID=CX295738; Name=CX295738; organism=Citrus clementina; type=EST; length=604bp
GAGGGTTATGGCCGTGATGGTATCTACAGATCTTTAAGGCCACCTTTTGT
TCTTCCCAGTGACCCCAGTTTTTCTATGGTTCATTTTCTCTTTAGAAACT
CTGCTTCTTATAGCTCCAAATTAGCACTTATTGATGCTGATTCGGATGAA
TCTTTGTCTTTTTCCCAGTTCAAATCCATTGTGATCAAGGTTTCTCATAG
CTTTCGCCATCTGGGCATTACAAAAAAAGATGTTGTTTTGATTTTTGCTC
CAAATTCAATTCAGTTCCCTATTTGCTTTCTTGGTGTCATTGCTATAGGC
GCTATAGCATCAACTGCCAATACTGTTTACACGGTCTCTGAGCTTTCAAA
GCAAGTCAAGGATTCCAATCCAAAACTTGTTATTACAGTCCCTGAATTAT
GGGACAAAGTTAAAGGCTTAAACTTGCCAGCTGTCCTTTTAGGTTCAAAA
GATAAGGTTTCTTCTTCTGGTCTTATTTCAAGAAGCTCTAAGATTGTTTC
TTTTCATGACTTGATTGAATTATCTGGGAGTGTAACAGATATTCCAGATG
TTTCTGTTAAGCAAACAGATGCTGCTGCTCTGTTGTACTCTTCAGGACAC
TGGT
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