CX295738

Overview
NameCX295738
Unique NameCX295738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.583e-15
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 1
Query:   16 DGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            D I+RS  P   +P      +  + F N +    K  LI+  + E+ ++SQ + +  KV+     LGI + D +++  PNS ++   FLG    GAI++ AN  +T +E+ KQ+K S  KL+IT     DKVK          ++                 F  L+E   S  ++P+V +   D  AL YSSG
Sbjct:   10 DLIFRSKLPDIYIPKH--LPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASQAKLIITQACYVDKVKD-------YAAEKNIQIICIDDAPQDCLHFSKLMEADES--EMPEVVINSDDVVALPYSSG 192          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CLL8_ORYSJ (Putative 4-coumarate--CoA ligase-like 8 OS=Oryza sativa subsp. japonica GN=4CLL8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 55/197 (27.92%), Postives = 93/197 (47.21%), Query Frame = 1
Query:   19 GIYRSLRPPFVLP----SDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            G+YRS  PP        S P + + H L     +   + A +DA +  +LSF+  +++ ++V+ +    G+ +  V L+ +PNS+ FP   L V+++GA+ S AN + T  EL++Q  D+ P L +   EL  K++ +  P V L   +                            D+P  ++ + DAA L YSSG
Sbjct:   16 GVYRSGHPPQFAAAAALSFPEYILPHMLLPGRRA---RPAFVDASTGAALSFAGLRALSLRVARALAAAGLRRGRVALLLSPNSLHFPALSLAVLSLGAVLSAANPLLTPDELARQADDAKPFLALVTGELAPKLRSI-APDVKLVLVEQLLADVAAEVD------------DDETLDLPAANIGRDDAALLFYSSG 196          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 56/194 (28.87%), Postives = 90/194 (46.39%), Query Frame = 1
Query:   22 IYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK-QTDAAALLYSSG 597
            ++RS  P   +P      +  ++F   A    +  LID  + E+LSF    ++  +V+     +G+     V++  PNS++F + FL    +GA+ +TAN ++T  E++KQV  S   +V+T P    KV GL  +  V  G                   F  L    GS   +P+V++    DA AL YSSG
Sbjct:    9 VFRSRLPDIAIPDH--LPLHDYVFERLADRRDRACLIDGATGETLSFGDVDALSRRVAAGLSSIGVCHGSTVMLLLPNSVEFAVAFLASSRLGAVTTTANPLHTPPEIAKQVAASGATVVVTEPAFVAKVSGLAGVTVVATGG-----------GAERCASFAGLAAADGSA--LPEVAIDVANDAVALPYSSG 187          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 1
Query:   16 DGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            D I+RS  P   +P      +  + F N +    K  LI+  + E+ ++SQ + +  KV+     LGI + D +++  PNS ++   FLG    GAI++ AN  +T +E+ KQ+K S  KL+IT     DKVK          ++                 F  L+E   S  ++P+V +   D  AL YSSG
Sbjct:   10 DLIFRSKLPDIYIPKH--LPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASLAKLIITQACYVDKVKD-------YAAEKNIQIICIDDAPQDCLHFSKLMEADES--EMPEVVIDSDDVVALPYSSG 192          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 53/192 (27.60%), Postives = 86/192 (44.79%), Query Frame = 1
Query:   22 IYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            +YRS  P   +       +  + F   A ++ +  LID  +D +  FS+ + I  KV+     LG+ +  VV++  PN I+F   F+G    GAI +TAN  Y   E++KQ K +  ++++T+    +K+  L    VL+ + D                 H  +      T  P V +   D  AL YSSG
Sbjct:   11 LYRSKLPDIEISDH--LPLHSYCFERVAEFADRPCLIDGATDRTYCFSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQ---------HISVLTEADETQCPAVKIHPDDVVALPYSSG 191          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CLL9_ORYSJ (4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 50/196 (25.51%), Postives = 99/196 (50.51%), Query Frame = 1
Query:   13 RDGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSD-ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            ++ ++RS  PP  +P     ++  F+   + +Y+ ++AL++A +   S ++ +      + + + R +G+ K  VV++  PN   +P+  LG+++ GA+ S  N     +E+ KQV+DS  KLV+     +DKVK   +P + +G ++                     + +G+   +P  + +Q+D  AL YSSG
Sbjct:   16 QEHVFRSRFPPVAVPD--GVTVPEFVLDGAEAYADRVALVEAAAGGRSYTYGEVARDTARFARALRSVGVRKGHVVVVALPNLAVYPVVSLGIMSAGAVFSGVNPRALAAEIKKQVEDSEAKLVVANEVAFDKVKDAGVPVIGVGDRERMPGAISWDGLLA------AADRTGAGV-VPVDAAQQSDLCALPYSSG 202          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.726e-14
Identity = 54/198 (27.27%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   16 DGIYRSLRPPFVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGL----NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            D I+RS  P   +P+     +  + F N + +SS+  LI+  + +  +++  +    KV+      GI  KD ++I  PNS +F   F+G   +GAI++ AN ++T +E+ KQ K S+ K+++T     +KVK      ++  + + S                   H  +    +  DIP+V ++  D  AL YSSG
Sbjct:    9 DIIFRSKLPDIYIPNH--LPLHSYCFENISEFSSRPCLINGANKQIYTYADVELNSRKVAAGLHKQGIQPKDTIMILLPNSPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIIVTQACHVNKVKDYAFENDVKIICIDS-------------APEGCLHFSVLTQANEHDIPEVEIQPDDVVALPYSSG 191          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CLL7_ORYSJ (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 65/205 (31.71%), Postives = 96/205 (46.83%), Query Frame = 1
Query:   25 YRSLRPPFVL-PSDPSFSMVHFLF----RNSASYSSKL-----ALIDADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSV---TDIPDVSVKQTDAAALLYSSG 597
            +RSLRPP  L P D   S   F F    R+S+S SS L     AL+DA + E++SF  F S V  ++ + R  +G+   DV  + AP  +  P+ +  +++IGA+ S AN   T +E+S+ V  S   +   V     K+       VLL S                  F  L+   G       +P V V+Q++ AA+ YSSG
Sbjct:   26 FRSLRPPVPLPPPDVPLSFPEFAFSLLPRSSSSSSSSLLPANPALVDAATGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFALLSIGAVVSPANPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDS----------------PHFRSLLMDCGQAQGQEPLPVVVVRQSETAAIQYSSG 214          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 56/199 (28.14%), Postives = 95/199 (47.74%), Query Frame = 1
Query:   16 DGIYRSLRPPFVLPSDPSFSMVHFLFRNSASY----SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGS-KDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 597
            D I+RS  P   +P+     +  ++F+  +      SS   +ID  +   L+++  ++ + +++     LGI   DVV++  PNS +F + FL V  +GA+++TAN  YT  E++KQ K S  K++IT   L DK+  L    VL+    D                F +L +     T++    +   D  A+ YSSG
Sbjct:   26 DFIFRSKLPDIFIPNH--LPLTDYVFQRFSGDGDGDSSTTCIIDGATGRILTYADVQTNMRRIAAGIHRLGIRHGDVVMLLLPNSPEFALSFLAVAYLGAVSTTANPFYTQPEIAKQAKASAAKMIITKKCLVDKLTNLKNDGVLIVCLDDDGDNGVVSSSDDGCVSFTELTQ--ADETELLKPKISPEDTVAMPYSSG 220          
BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 59/211 (27.96%), Postives = 101/211 (47.87%), Query Frame = 1
Query:   13 RDGIYRSLRPPFVLPS-DPSFSMVHF----LFRNSA------SYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL--GITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLP--AVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP-DVSVKQTDAAALLYSSG 597
            R GIY SLRP   LP  D   S   F    L ++S       +  +   L+++ S ++L++ +    V  ++ S R     +  ++V  I +P+S+  P+ +L +++IG + S AN + + SE+S QV+ S P +     +   K++  +LP   VL+ S +                F   +  S S +  P  V V Q+D AA+L+SSG
Sbjct:   20 RTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTYLVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTE----------------FLSWLNRSDSSSVNPFQVQVNQSDPAAILFSSG 214          
The following BLAST results are available for this feature:
BLAST of CX295738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
4CL1_PETCR5.583e-1529.904-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CLL8_ORYSJ7.292e-1527.92Putative 4-coumarate--CoA ligase-like 8 OS=Oryza s... [more]
4CL5_ORYSJ1.244e-1428.87Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL2_PETCR1.624e-1429.904-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL_PINTA2.122e-1427.604-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CLL9_ORYSJ2.122e-1425.514-coumarate--CoA ligase-like 9 OS=Oryza sativa sub... [more]
4CL2_TOBAC4.726e-1427.274-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CLL7_ORYSJ6.173e-1431.714-coumarate--CoA ligase-like 7 OS=Oryza sativa sub... [more]
4CL4_ARATH6.173e-1428.144-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
4CLL9_ARATH7.546e-1227.964-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC05075D04SK DroRLeaf1 Citrus clementina cDNA clone C05075D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295738 ID=CX295738; Name=CX295738; organism=Citrus clementina; type=EST; length=604bp
GAGGGTTATGGCCGTGATGGTATCTACAGATCTTTAAGGCCACCTTTTGT
TCTTCCCAGTGACCCCAGTTTTTCTATGGTTCATTTTCTCTTTAGAAACT
CTGCTTCTTATAGCTCCAAATTAGCACTTATTGATGCTGATTCGGATGAA
TCTTTGTCTTTTTCCCAGTTCAAATCCATTGTGATCAAGGTTTCTCATAG
CTTTCGCCATCTGGGCATTACAAAAAAAGATGTTGTTTTGATTTTTGCTC
CAAATTCAATTCAGTTCCCTATTTGCTTTCTTGGTGTCATTGCTATAGGC
GCTATAGCATCAACTGCCAATACTGTTTACACGGTCTCTGAGCTTTCAAA
GCAAGTCAAGGATTCCAATCCAAAACTTGTTATTACAGTCCCTGAATTAT
GGGACAAAGTTAAAGGCTTAAACTTGCCAGCTGTCCTTTTAGGTTCAAAA
GATAAGGTTTCTTCTTCTGGTCTTATTTCAAGAAGCTCTAAGATTGTTTC
TTTTCATGACTTGATTGAATTATCTGGGAGTGTAACAGATATTCCAGATG
TTTCTGTTAAGCAAACAGATGCTGCTGCTCTGTTGTACTCTTCAGGACAC
TGGT
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