CX295738

Overview
NameCX295738
Unique NameCX295738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295738 vs. ExPASy Swiss-Prot
Match: 4CLL5_ORYSJ (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 57/197 (28.93%), Postives = 97/197 (49.24%), Query Frame = 1 
Query:   22 IYRSLRPPFVLPSDP---SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS-FRHLGITKKDVVLIFAPNSIQFPICFLGVIAIGAIASTANTVYTVSELSKQVKDSNPKLVITVPELWDKVKGLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP-DVSVKQTDAAALLYSSG 597
            I+ S R P  LP +    + +   F   +S++   + AL+DA +  ++S+  F + V  ++   +  LG+   DV L+ AP+ ++ P+    +++IGA+ S AN V T  E + QV  S P +    PE+  K+   ++  V++GS +                +  L    G     P  V+VKQ+D AA+LYSSG
Sbjct:   27 IFHSTRAPGDLPPESLPMTAAAYAFSLLSSSTLPGRPALVDAATGIAISYPSFLAAVRSLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFALMSIGAVVSPANPVSTPEEYAHQVALSRPVVAFAAPEVAAKLPE-HVRCVVIGSDE----------------YGRLAASDGRRAAAPAAVAVKQSDTAAVLYSSG 206
The following BLAST results are available for this feature:
BLAST of CX295738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
4CLL5_ORYSJ1.287e-1128.934-coumarate--CoA ligase-like 5 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC05075D04SK DroRLeaf1 Citrus clementina cDNA clone C05075D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295738 ID=CX295738; Name=CX295738; organism=Citrus clementina; type=EST; length=604bp
GAGGGTTATGGCCGTGATGGTATCTACAGATCTTTAAGGCCACCTTTTGT
TCTTCCCAGTGACCCCAGTTTTTCTATGGTTCATTTTCTCTTTAGAAACT
CTGCTTCTTATAGCTCCAAATTAGCACTTATTGATGCTGATTCGGATGAA
TCTTTGTCTTTTTCCCAGTTCAAATCCATTGTGATCAAGGTTTCTCATAG
CTTTCGCCATCTGGGCATTACAAAAAAAGATGTTGTTTTGATTTTTGCTC
CAAATTCAATTCAGTTCCCTATTTGCTTTCTTGGTGTCATTGCTATAGGC
GCTATAGCATCAACTGCCAATACTGTTTACACGGTCTCTGAGCTTTCAAA
GCAAGTCAAGGATTCCAATCCAAAACTTGTTATTACAGTCCCTGAATTAT
GGGACAAAGTTAAAGGCTTAAACTTGCCAGCTGTCCTTTTAGGTTCAAAA
GATAAGGTTTCTTCTTCTGGTCTTATTTCAAGAAGCTCTAAGATTGTTTC
TTTTCATGACTTGATTGAATTATCTGGGAGTGTAACAGATATTCCAGATG
TTTCTGTTAAGCAAACAGATGCTGCTGCTCTGTTGTACTCTTCAGGACAC
TGGT
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