CX295744

Overview
NameCX295744
Unique NameCX295744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:21..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.696e-68
Identity = 125/231 (54.11%), Postives = 170/231 (73.59%), Query Frame = 1
Query:   40 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            M FVK  K+KAY+ R+QV+++RRREGKTDY+ R RLI QDKNKYN+PKYR V R TN D+IAQ+V + IVGD VL AAYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++ D Y+G  +  G+ + V+P D + RPF+A LDVGL +T+TG +VF            +PH + RFAG++ + K+L+AE  R YI+G HVA+YM+ L  ++ + Y+  F++YIK G+
Sbjct:    1 MGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGV 231          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.900e-66
Identity = 129/229 (56.33%), Postives = 158/229 (69.00%), Query Frame = 1
Query:   46 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED-YSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            FV   K+KAYFKR+Q K+KRRREGKTDY AR RL  QDKNKYNTPKYR VVR TNKDIIAQI  A + GD ++ +AYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D  YEG +E  G++ Y    A  +  FR  LD GL +T+TG R+F            IPHS KRF GF+ DGK L+AE H+ +I+GGHV  YM  L E+  E Y+  F+ +IK G+
Sbjct:   13 FVAVLKNKAYFKRYQPKFKRRREGKTDYFARKRLCVQDKNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEEENEEAYKRQFSRFIKNGI 239          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.607e-63
Identity = 124/228 (54.39%), Postives = 156/228 (68.42%), Query Frame = 1
Query:   40 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA--DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYI 717
            MAF K  KS AY  RFQ  ++RRREGKTDY  R RL+ Q K KYNTPKYR VVRFTNKDII QI+S+ I GD VLAAAY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D+ Y+G  E  GE Y +  A  D  RPF+  LD+GL +TTTG RVF            +PHS+ RF G+  + +++D E+ R YI+GGHV+ YM  L +D+ E++   F  Y+
Sbjct:    1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGE-YELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYL 227          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.106e-63
Identity = 125/231 (54.11%), Postives = 155/231 (67.10%), Query Frame = 1
Query:   40 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            M F+KA KS  YF R+Q KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  + ++LD E  RKYIYGGHVA YM  L++D+ E+YQ  F+  I  G+
Sbjct:    1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGI 231          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 6.106e-63
Identity = 125/231 (54.11%), Postives = 155/231 (67.10%), Query Frame = 1
Query:   40 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            M F+KA KS  YF R+Q KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  + ++LD E  RKYIYGGHVA YM  L++D+ E+YQ  F+  I  G+
Sbjct:    1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGI 231          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.671e-44
Identity = 87/124 (70.16%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   40 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE 411
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.392e-20
Identity = 69/220 (31.36%), Postives = 105/220 (47.73%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            A+  +++V ++RRREGKT++R R++L+        TP  R V R +  +I+AQIV  + VGD ++ +A++ E+ + G +    N  AAY TGLLL ++ LK        EGN E                  A+LD+GL   T G  V             IPHS++   G  +             I G HV  Y   L  ++ EKY   F++Y+K G+
Sbjct:    2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQFSKYLKNGL 175          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 68/220 (30.91%), Postives = 104/220 (47.27%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            A+  R+++ ++RRREGKTDYRAR +++        T K R VVR T   +IAQI++  + GD  L +A++ +L + G   G +N AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF            +PH +      S+             I G H+  Y  +L E+E  K    F++Y+++G+
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGESVLPDESR-------------IRGEHIMEYAESLDEEELRK---RFSKYLERGL 172          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 76/221 (34.39%), Postives = 104/221 (47.06%), Query Frame = 1
Query:   70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            A+  R++V  +RRREGKT+Y  R  ++   K        RFVVR TN+ I  Q++ A   GD  +AAA++ EL  +YG   G  N  AAY TGLL A R LK               G  Y            A+LD+GL + T G RVF            IPHS+           ++  E +R  I G H+A Y + L E  PE Y+  F+ Y+ +G+
Sbjct:    2 AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKP-------RFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK--------------AGITY------------AVLDIGLHRPTRGARVFAALKGALDAGLEIPHSE-----------EVLPEEYR--IRGEHIAKYAAMLKEQNPELYEKRFSLYLARGL 176          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 66/216 (30.56%), Postives = 99/216 (45.83%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQIV A  +GD  +A A    L ++G      N +AAY  GL++             Y+  +    E              A+LD+GL + T G RVF            IPH ++      +             I G H+A Y + L E+ P+ Y++ F+ Y+++G+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLVISKKP-------RLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDER-------------IRGEHIAEYAAKLKEENPDAYKARFSRYLQRGL 175          
The following BLAST results are available for this feature:
BLAST of CX295744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL5_DICDI3.696e-6854.1160S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_OIKDI5.900e-6656.3360S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_YEAST1.607e-6354.3960S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5B_SCHPO6.106e-6354.1160S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO6.106e-6354.1160S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_PIG1.671e-4470.1660S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL18_META36.392e-2031.3650S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_METTH3.173e-1930.9150S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_HYPBU3.173e-1934.3950S ribosomal protein L18P OS=Hyperthermus butylic... [more]
RL18_PYRAR9.231e-1930.5650S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]

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Properties
Property NameValue
Genbank descriptionC05075D10SK DroRLeaf1 Citrus clementina cDNA clone C05075D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295744 ID=CX295744; Name=CX295744; organism=Citrus clementina; type=EST; length=738bp
CGAGGCTCTCCTTTTCTCTTAAATTCGAAAGTTCGAGCAATGGCCTTTGT
CAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAAGTACA
AGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCCTGATT
AATCAGGACAAGAATAAGTACAACACACCCAAGTACCGATTTGTTGTCCG
ATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACATTGTTG
GTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTTATGGA
CTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCT
TTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTATGAGG
GCAATGTTGAGGCTACTGGAGAGGATTACTCTGTCGAACCAGCTGATACA
AGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACAACAAC
TGGAAACCGTGTGTTTGGTGCTCTGAAGGGAGCATTAGATGGTGGATTGG
ACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAAGGACGGCAAG
CAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACATGTTGC
TGCTTACATGAGTACATTGATGGAAGATGAGCCAGAGAAGTATCAATCTC
ACTTCACTGAGTACATCAAGAAAGGAATGATGCTGATG
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