CX295744

Overview
NameCX295744
Unique NameCX295744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:21..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 70/216 (32.41%), Postives = 98/216 (45.37%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQIV A   GD  +  A    L ++G      N AAAY  GL++  +                          A  RR   A+LD+GL +   G RVF            IPH           G+++  +  R  I G HVA Y   L E+ PE Y++ F+ Y+++G+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPH-----------GEEVLPDEDR--IKGKHVAEYAEKLKEENPEAYKARFSRYLQRGL 175          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METJA (50S ribosomal protein L18P OS=Methanocaldococcus jannaschii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 64/215 (29.77%), Postives = 98/215 (45.58%), Query Frame = 1
Query:   85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            ++VK++RRRE KTDYR R++L+   K        R V R T    IAQIV  +  GD  + +A++ EL + G +    N  +AY TG LL ++ L         +G  E                  A+LD+GL + T GN +F            IPH ++                  + I G H+ AY   L E + E+Y+  F++Y++KG+
Sbjct:    7 YRVKFRRRREAKTDYRKRLKLLLSRKP-------RLVARRTLNHCIAQIVLYDEKGDKTVVSAHSRELIKLGYKGHTGNLPSAYLTGYLLGKKALA--------KGYTE------------------AVLDIGLHRATKGNAIFAILKGALDAGMEIPHGEEILPS-------------EERIRGEHIKAYAEMLKEQDEERYKKQFSKYLEKGL 175          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17
Identity = 68/216 (31.48%), Postives = 98/216 (45.37%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            R++V ++RRREG T+YR R RLI   K        R VVR TNK IIAQ+V A   GD  +       L ++G      N +AAY  GL+              Y+  +    E              A+LD+GL +   G+RVF            IPH           G+++  E  R  + G HVA Y + L E+ PE Y++ F+ Y+++G+
Sbjct:    6 RYKVPFRRRREGLTNYRKRRRLILSRKP-------RLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPH-----------GEEVLPEDDR--VSGKHVAEYAAKLKEENPELYKARFSRYLQRGV 175          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 68/216 (31.48%), Postives = 105/216 (48.61%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG+
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGL 174          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 68/216 (31.48%), Postives = 105/216 (48.61%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG+
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGL 174          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 60/163 (36.81%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 570
            R+ V ++RRREG+T+Y AR RL+   K        R VVR TN+ II QI++A++ GD    AA + EL ++G E  L N  AAY TG+LLA R LK               G++             A+LD+GL + T G RVF            IPH+++
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK--------------AGQE------------GAILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1
Query:  586 SKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIK 720
            SKD KQLDAEVHRKYIYGGHVAAYM+ LMEDEPEKYQSHF+ YIK
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIK 46          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 65/219 (29.68%), Postives = 104/219 (47.49%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTD-YRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            R++VK++RRREGKTD Y+ RI +I        + K R VVRF+N+ ++AQ++ +   GD  +A A + EL  ++G   G  N  AAY  GLL+  R L K +++                           A+LDVGL + T G R+F            +PH +             + +     + G H+A Y + L +  PE Y+  F++Y+ +G+
Sbjct:    6 RYKVKFRRRREGKTDYYKRRIMVI--------SGKPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDE-------------EVQPSEDRLNGEHIAQYAADLKQSNPELYKIRFSKYLARGL 176          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 71/216 (32.87%), Postives = 100/216 (46.30%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            R++V  +RRREGKT+YR R++L+   K        R VVR TN+ +IAQIV     GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF            +PHSD+     S+             I G H+AAY     E  PE+    F EY K+G+
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSR-------------IRGEHIAAY----YEMNPER----FGEYEKRGL 169          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_PYRCJ (50S ribosomal protein L18P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.615e-17
Identity = 64/216 (29.63%), Postives = 96/216 (44.44%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            R++V ++RRREG T+YR R +L+   K        R VVR TNK +IAQIV A   GD  +       L ++G +    N +AAY  GL++             Y+   +   E              A+LD+GL + T G RVF            +PH +             +     + I G HVA Y   L E+ PE Y++ F+ Y+++G+
Sbjct:    6 RYKVPFRRRREGVTNYRKRRKLLLSRKP-------RLVVRKTNKHLIAQIVIARPHGDETVVGLDTRVLSKFGWKGDENNTSAAYLLGLIVG------------YKARAKGIKE--------------AILDIGLHRPTPGARVFAVMKGVIDAGVEVPHGE-------------EVVPSEERIRGEHVAEYAKRLKEEAPEAYKARFSRYLQRGL 175          
The following BLAST results are available for this feature:
BLAST of CX295744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL18_PYRAE2.056e-1832.4150S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]
RL18_METJA7.814e-1829.7750S ribosomal protein L18P OS=Methanocaldococcus j... [more]
RL18_THENV1.741e-1731.4850S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_METM72.274e-1731.4850S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM62.274e-1731.4850S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METHJ3.878e-1736.8150S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL5_SOLME5.065e-1788.8960S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL18_CALMQ5.065e-1729.6850S ribosomal protein L18P OS=Caldivirga maquiling... [more]
RL18_ARCFU5.065e-1732.8750S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_PYRCJ6.615e-1729.6350S ribosomal protein L18P OS=Pyrobaculum calidifo... [more]

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Properties
Property NameValue
Genbank descriptionC05075D10SK DroRLeaf1 Citrus clementina cDNA clone C05075D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295744 ID=CX295744; Name=CX295744; organism=Citrus clementina; type=EST; length=738bp
CGAGGCTCTCCTTTTCTCTTAAATTCGAAAGTTCGAGCAATGGCCTTTGT
CAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAAGTACA
AGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCCTGATT
AATCAGGACAAGAATAAGTACAACACACCCAAGTACCGATTTGTTGTCCG
ATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACATTGTTG
GTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTTATGGA
CTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCT
TTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTATGAGG
GCAATGTTGAGGCTACTGGAGAGGATTACTCTGTCGAACCAGCTGATACA
AGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACAACAAC
TGGAAACCGTGTGTTTGGTGCTCTGAAGGGAGCATTAGATGGTGGATTGG
ACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAAGGACGGCAAG
CAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACATGTTGC
TGCTTACATGAGTACATTGATGGAAGATGAGCCAGAGAAGTATCAATCTC
ACTTCACTGAGTACATCAAGAAAGGAATGATGCTGATG
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