CX295744
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14 Identity = 56/162 (34.57%), Postives = 75/162 (46.30%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSD 567 R+ V ++RR EGKTDY R+ L++ TP R VVR TN+ II Q+V + GDS L AAY+ EL YG E + AAY TG+L A V+A Y A+LD+GL + G RVF +P+ + Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLLSS-----GTP--RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_THESM (50S ribosomal protein L18P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.073e-14 Identity = 65/221 (29.41%), Postives = 97/221 (43.89%), Query Frame = 1 Query: 70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 A+ R++V ++RRREGKT+Y R+ L+ K R VVR T +AQIV GD + +A+ EL R +G + N +AY GLL+ + L E +E A+LD+GL T G+ +F +PHS++ + G + I G H+A Y L ED+ E Y+ F Y+ KG+ Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLALLKSGKP-------RLVVRKTLNHHVAQIVLYAPEGDKTVVSAHTRELMRDFGWKGHGGNTPSAYLLGLLIGYKAL---------EKGIE-----------------EAILDIGLHPPTKGSSIFAVLKGAVDAGLNVPHSEEIYPG-------------EERINGKHIAEYAKMLKEDD-ENYKKQFGGYLVKGL 175
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_THEGJ (50S ribosomal protein L18P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14 Identity = 64/217 (29.49%), Postives = 97/217 (44.70%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 R++V ++RRREGKT+Y R++L+ + K R VVR + IAQI+ N GD + +A+ EL R +G + N +AY GLL+ + K +E A+LD+GL T G+ VF +PHS++ F E +R I G HVA Y L +++ Y+ F Y+ KG+ Sbjct: 6 RYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKSLNHHIAQIIVYNPKGDRTIVSAHTRELIRDFGWKGHTGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPTRGSSVFAVLKGAVDAGLNVPHSEEIF-----------PEDYR--IRGEHVAEYAKALKQEDETLYRKQFGGYLVKGL 176
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14 Identity = 64/206 (31.07%), Postives = 91/206 (44.17%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQS 699 R+ V ++RRREGKTDY R +LI ++ R VVR TN+ II Q++ A + GD L A + EL YG + +N AAY TG+L A V+A D+ PA A+LD+GL + T G +VF +PH ++ + + G H+AAY D E +S Sbjct: 6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAYAPDRAGDLVENVES 165
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_IGNH4 (50S ribosomal protein L18P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14 Identity = 64/217 (29.49%), Postives = 93/217 (42.86%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 R++V +RRREGKT+Y R + K RFVVR +NK + Q++ GD V+AAA++ EL + YG + + A Y TG+L A R K G Y+V D+GL K T G RVF +P D I G H+A+Y +L + PE+YQ F + +++G+ Sbjct: 6 RYKVPRRRRREGKTNYYKRYTMALSRKP-------RFVVRKSNKYVWVQVIEFAPEGDKVIAAAHSKELEKKYGWKGYGNSLPAVYLTGMLAALRAKK--------------AGIQYAVP------------DIGLHKPTKGARVFAAIKAANDVGLEVPVGD--------------VVPDESRIRGEHIASYAESLKNENPEEYQRRFAKLLERGL 175
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_PYRKO (50S ribosomal protein L18P OS=Pyrococcus kodakaraensis GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14 Identity = 65/221 (29.41%), Postives = 99/221 (44.80%), Query Frame = 1 Query: 70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 A+ R++V ++RRREGKT+Y R++L+ + K R VVR T IAQIV + GD L +A+ EL R +G + N +AY GLL+ Y + A A+LD+GL T G+ +F +PHS+ ++ E +R I G H+A Y L E++ Y+ F+ Y+ KG+ Sbjct: 2 AHGPRYRVPFRRRREGKTNYHKRLKLL-------KSKKPRLVVRKTLNHHIAQIVVYDPKGDKTLVSAHTMELMRDFGWKGHGGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSE-----------EIYPEDYR--INGEHIANYAKALKEEDEALYRKQFSGYLVKGL 176
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14 Identity = 64/221 (28.96%), Postives = 95/221 (42.99%), Query Frame = 1 Query: 70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 A+ R++V ++RRREGKT+YR R++L+ K R VVR + IAQI+ + GD L +A+ EL R +G + N +AY GLL+ Y + A A+LD+GL G+ VF +PHS + F + I G H+A Y L E + EK++ F Y+ KG+ Sbjct: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIG-----------------------YKAKQAGIE---EAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFPDEYR-------------IRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGL 176
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_PYRHO (50S ribosomal protein L18P OS=Pyrococcus horikoshii GN=rpl18p PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14 Identity = 63/221 (28.51%), Postives = 99/221 (44.80%), Query Frame = 1 Query: 70 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 A+ R++V ++RRREGKT+YR R++L+ K R VVR + IAQI+ + GD L +A+ EL R +G + N +AY GLL+ + K +E A+LD+GL G+ +F +PHS + F E +R I G H+A Y L E + ++++ F Y++KG+ Sbjct: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKK---------AGIE-----------------EAILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIF-----------PEDYR--IRGEHIAEYARMLKEQDEDRFRRQFGGYLEKGL 176
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13 Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 Query: 46 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 186 FVK K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTP + Sbjct: 2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13 Identity = 62/208 (29.81%), Postives = 87/208 (41.83%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHF 705 R++V +RRRE +TDY R+RL+ K R V R +N+ + AQ+++ GD AA + L YG E N +AY TG L R ++ G D A+LD+GL T GN+VF IPH++ A +S++ G H+AAY DEP Y S F Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRN-------------RGEHIAAYAE--QRDEP-LYNSDF 164 The following BLAST results are available for this feature:
BLAST of CX295744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295744 ID=CX295744; Name=CX295744; organism=Citrus clementina; type=EST; length=738bpback to top |