CX295744

Overview
NameCX295744
Unique NameCX295744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:21..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_SULAC (50S ribosomal protein L18P OS=Sulfolobus acidocaldarius GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 61/216 (28.24%), Postives = 91/216 (42.13%), Query Frame = 1
Query:   85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            +++K++RRREGKTDY  R   +  +         RFV R TNK +I  +   +  GD ++A A++ EL  +YG +    N  AAY TG L   R +K           V+A                 A+ D+GL     G R+F            +P  D         GK  D       + G H++AY   L  +  E Y   F+ YI++G+
Sbjct:    7 YRIKFRRRREGKTDYYTRYTYVINN-------AIRFVPRLTNKYVIVSVSKFDQKGDIMIAYAHSIELVKKYGWKGDTNNTPAAYLTGYLAGLRAVK---------SGVKA-----------------AVSDIGLFVPVKGGRIFAVIKGAIDAGLKVPVGDL--------GKLKDR------VNGSHISAYAQKLKNENQELYNKLFSSYIQRGL 175          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 62/201 (30.85%), Postives = 83/201 (41.29%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEP 684
            R++V  +RRRE +TDY  R+RL+   K        R V R +N  + AQ+V+    GD   AAA + EL  YG +    N  +AY TG L   R +                G D             A+LD+GL   T GN+ F            IPH+D   A +S+               G H+AAY   L  DEP
Sbjct:    6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARAVD--------------AGLD------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSR-------------TRGEHIAAYAEQL--DEP 158          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 58/215 (26.98%), Postives = 90/215 (41.86%), Query Frame = 1
Query:   85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            ++V++KRRREGKT+Y  R +L++ DK        R VVR T+   I Q+V     GD  L +A +  L  +G      N +AAY TG L  ++ L                 E Y             +LD+G+  +  G +++            IPH+D      S+             I G H+A Y  ++ +DE     + F  YI+ G+
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL----------------NEGYD----------ETILDIGVQPSIKGTKIYAVLKGALDAGLYIPHNDSILPEDSR-------------IRGEHIAQYAESMDDDEK---NAKFANYIRCGL 172          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 59/216 (27.31%), Postives = 89/216 (41.20%), Query Frame = 1
Query:   85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729
            ++VK +RRREGKT+Y  R   +   +        RF+VR TNK +I QI   +  GD ++A+A++ EL  ++G +    N  AAY TG L   R +K                          R     + D+GL   + GNRVF            IP                D  +    I G H+A Y   L  +  + Y   F+ Y+++G+
Sbjct:   10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGL 178          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 55/183 (30.05%), Postives = 81/183 (44.26%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKY 630
            R++V ++RRREG+T+Y  R RLI   K        R VVR  N +I  Q++ A + GD  L    + EL  YG +    N  AAY TGLL  +++L +                 Y+            +LD+GL   + G+RV+            +PHS + F     D  ++  EV R Y
Sbjct:    6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL----------------GYN----------EGILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVF----PDDSRIRGEVIRDY 151          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 56/193 (29.02%), Postives = 86/193 (44.56%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYM 660
            R++V ++RRREG+TDY  R+RL+   ++       R VVR + + +  Q+V+ +  GD  L++A + EL +YG E    N  AAY TGLL   + L      + YE  V                     LD+G+  ++ G+RV+            +PH+   F    +             I G HVA YM
Sbjct:    6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTLA-----EGYESGV---------------------LDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVFPSDER-------------IRGEHVAEYM 152          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13
Identity = 53/145 (36.55%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVF 516
            R+ V+++RRREG+TDY  R RLI   +N       R VVR TN+ II Q+++A + GD  L    + EL  +G +  L N  AAY TG+L A R  K       YEG +                      D+GL   +TG RVF
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQKA-----GYEGGI---------------------ADIGLQVASTGARVF 117          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 60/193 (31.09%), Postives = 88/193 (45.60%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 657
            R++V ++RRREGKTDY  R++LI        + K R VVR T+  +IAQI+     GD VLAAA + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+            +P S+  F          D  +  ++I G   + Y
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPS--------DDRIRGEHIAGNTASKY 157          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 56/196 (28.57%), Postives = 81/196 (41.33%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 669
            R+ V  +RRRE +T+Y  R+RL+   K        R V R +N    AQ+V     GD  +A+A + +L  +G E    N  AAY TGLL  +R ++               G D             A+LD+GL   T GN+VF            +PH++  FA + +               G H+A Y   L
Sbjct:    6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQR-------------TRGAHIAEYAEQL 155          
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 68/230 (29.57%), Postives = 97/230 (42.17%), Query Frame = 1
Query:   82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED---------------EPEKYQSHFTEYIKK 723
            R++V  +RRREGKT+Y  R R+I            RF+VR T   I  Q+ +A   GD ++AAA+++EL  R+G + G  N +AAY TGLL A R L+               G +Y+V             D+GL +   G  VF            +P            G+   +E   + I G H+A+Y   L E+               +PE   SHF E   K
Sbjct:    6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVP------------DIGLHRPVKGALVFAAIKAANDAGLKVP----------MGGEVAPSE---ERIRGEHIASYAKILRENGLLEKRFSRYLANGLQPEDLPSHFEEVKNK 189          
The following BLAST results are available for this feature:
BLAST of CX295744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL18_SULAC2.601e-1328.2450S ribosomal protein L18P OS=Sulfolobus acidocald... [more]
RL18_HALLT2.601e-1330.8550S ribosomal protein L18P OS=Halorubrum lacusprof... [more]
RL18_METST4.437e-1326.9850S ribosomal protein L18P OS=Methanosphaera stadt... [more]
RL18_SULSO5.795e-1327.3150S ribosomal protein L18P OS=Sulfolobus solfatari... [more]
RL18_METTP5.795e-1330.0550S ribosomal protein L18P OS=Methanosaeta thermop... [more]
RL18_METBU7.569e-1329.0250S ribosomal protein L18P OS=Methanococcoides bur... [more]
RL18_METLZ9.885e-1336.5550S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_UNCMA2.202e-1231.0950S ribosomal protein L18P OS=Uncultured methanoge... [more]
RL18_NATPD2.202e-1228.5750S ribosomal protein L18P OS=Natronomonas pharaon... [more]
RL18_DESK16.407e-1229.5750S ribosomal protein L18P OS=Desulfurococcus kamc... [more]

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Properties
Property NameValue
Genbank descriptionC05075D10SK DroRLeaf1 Citrus clementina cDNA clone C05075D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295744 ID=CX295744; Name=CX295744; organism=Citrus clementina; type=EST; length=738bp
CGAGGCTCTCCTTTTCTCTTAAATTCGAAAGTTCGAGCAATGGCCTTTGT
CAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAGGTTAAGTACA
AGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAATTCGCCTGATT
AATCAGGACAAGAATAAGTACAACACACCCAAGTACCGATTTGTTGTCCG
ATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCCAACATTGTTG
GTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCCTCGTTATGGA
CTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTTCT
TTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGATGAGTATGAGG
GCAATGTTGAGGCTACTGGAGAGGATTACTCTGTCGAACCAGCTGATACA
AGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCAAAACAACAAC
TGGAAACCGTGTGTTTGGTGCTCTGAAGGGAGCATTAGATGGTGGATTGG
ACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAAGGACGGCAAG
CAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGGACATGTTGC
TGCTTACATGAGTACATTGATGGAAGATGAGCCAGAGAAGTATCAATCTC
ACTTCACTGAGTACATCAAGAAAGGAATGATGCTGATG
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