CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.003e-77
Identity = 143/192 (74.48%), Postives = 167/192 (86.98%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMET----GEDVGNSAV 616
            +D+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ VDGK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T+ENVERWL+ELRDH D NIV+ML+GNKSDLRHL AV T++ ++FAEK +L F+ETSAL++TNV+ AF  +LT+IYRIVS+K +       E  GN+ V
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDRSAHDESPGNNVV 196          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 289.656 bits (740), Expect = 1.003e-77
Identity = 143/192 (74.48%), Postives = 167/192 (86.98%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMET----GEDVGNSAV 616
            +D+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ VDGK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T+ENVERWL+ELRDH D NIV+ML+GNKSDLRHL AV T++ ++FAEK +L F+ETSAL++TNV+ AF  +LT+IYRIVS+K +       E  GN+ V
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVV 196          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.310e-77
Identity = 139/194 (71.65%), Postives = 165/194 (85.05%), Query Frame = 2
Query:   44 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSK 625
            +R + +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+L V+GK +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWLRELRDH D NIV+M+ GNKSDL HL AVS +DG + +EKE L F+ETSALEATN++ AF  +LT+IY IVSKKA+   E    ++VP +
Sbjct:    3 HRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQ 196          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 1.711e-77
Identity = 144/193 (74.61%), Postives = 165/193 (85.49%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAM----ETGEDVGNSAVP 619
            +D+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRS+ VDGK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T+ENVERWL+ELRDH D NIV+ML+GNKSDLRHL AV T++ ++FAEK  L F+ETSAL+ TNV+ AF  +LT+IYRIVS+K M    E      N+ VP
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVP 197          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.918e-77
Identity = 138/190 (72.63%), Postives = 168/190 (88.42%), Query Frame = 2
Query:   47 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAV 616
            R +++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR+L V+G+ +KAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+ +TFENV RWL+ELRDH D NIV+MLIGNK+DL+HL AV+TED +S+AEKE L F+ETSALEA NV+ AF  +L+++YRI+SKK++ + +   N+ +
Sbjct:    4 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANI 193          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 8.489e-77
Identity = 138/187 (73.80%), Postives = 161/187 (86.10%), Query Frame = 2
Query:   47 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGN 607
            R + +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+L V+GK +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWLRELRDH D NIV+M+ GNKSDL+HL AVS EDG++ AEKE L F+ETSALEA N++ AF  +LT+IY I+SKKA+   E   N
Sbjct:    4 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSN 190          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 285.419 bits (729), Expect = 1.891e-76
Identity = 141/195 (72.31%), Postives = 164/195 (84.10%), Query Frame = 2
Query:   44 YRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE-DVGNSAVPSK 625
            +R + +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+  V+GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV RWLRELRDH D NIV+M+ GNKSDL HL +V+ EDG+S AEKE L F+ETSALEATNV+ AF  +L +IY I+SKKA+   E    NSA+P +
Sbjct:    3 HRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQ 197          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.658e-75
Identity = 136/193 (70.47%), Postives = 162/193 (83.94%), Query Frame = 2
Query:   47 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSK 625
            R + +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+L V+GK +KAQIWDTAGQERYRAITSAYYRGAVGALL YD+T+  TF+NV+RWLRELRDH D NIV++L GNKSDL+HL AVS +D ++  +KE L F+ETSALEA NVD AF  +LT IY I+SKKA+   E   ++A+P +
Sbjct:    4 RVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQ 196          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 1.770e-74
Identity = 135/202 (66.83%), Postives = 167/202 (82.67%), Query Frame = 2
Query:   41 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSV 646
            G R + +Y YLFK+VLIGDSGVGKSN+LSRFTRN FSL+SKSTIGVEFAT+SL ++GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  +F+NV RWLRELRDH D +IV+M++GNKSDL HL AVS ++GK+ AEKE LFF+ETSA+EA NV+ AF  ++T++Y IV++KA+   E    SA    + K +S+
Sbjct:    2 GGRVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISI 203          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.713e-73
Identity = 130/182 (71.43%), Postives = 162/182 (89.01%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGED 598
            ED+YDYLFK VLIGDSGVGKSNLL RFTRNEF++ESKSTIGVEFATR++ +D K IKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+T+ S+F+NV RWL+ELR+H D NIV+ML+GNK+DL HL AVSTE+ ++FA + +L F+ETSA++A+NV+ AF  VLT+I+RIVS +++E G+D
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDD 185          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11B_DISOM1.003e-7774.48Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN1.003e-7774.48Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11C_LOTJA1.310e-7771.65Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_BOVIN1.711e-7774.61Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAA2A_ARATH2.918e-7772.63Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU8.489e-7773.80Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA2C_ARATH1.891e-7672.31Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11A_TOBAC4.658e-7570.47Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ1.770e-7466.83Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
YPT3_SCHPO9.713e-7371.43GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
back to top