CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.025e-70
Identity = 129/182 (70.88%), Postives = 155/182 (85.16%), Query Frame = 2
Query:   65 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNS 610
            DY+FKVVLIGDS VGKS LL+RF RNEF+L+SK+TIGVEF TR+L++D + +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F++V RWL ELR H D NIV+MLIGNKSDL  L  V TED K FAE+E+LFFMETSALE+TNV+NAF  VLT+IYRIVSKK +   E+V +S
Sbjct:   16 DYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSS 197          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.893e-70
Identity = 125/186 (67.20%), Postives = 159/186 (85.48%), Query Frame = 2
Query:   35 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETG 592
            M    ++++YDYL+K+VLIGDSGVGKSNLLSRFTRNEFSLE+KSTIGVEFATR++  +GK IKAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+ + +T+++VERW+ ELR++ D NI +ML+GNKSDLRHL  VST++ K F+EK  L F+ETSAL+++NV+ AF  +LTQIY I+S+ +  TG
Sbjct:    1 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTG 186          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.451e-68
Identity = 126/181 (69.61%), Postives = 151/181 (83.43%), Query Frame = 2
Query:   65 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGN 607
            DY+FKVVLIGDS VGKS +L+RF RNEFSL+SKSTIGVEF TR+L +D K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL ELR+H D NIV++LIGNK DL +   V TED K FAEKE LFF+ETSALEATNV++AF  VLT+IY IV+KK++   E  GN
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGN 195          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 3.575e-67
Identity = 124/183 (67.76%), Postives = 150/183 (81.97%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGN 607
            DYD LFK+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR+L +DGK IKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ S++EN   WL ELR++ D N+ V LIGNKSDL HL AV TE+ K+FA++  L F ETSAL + NVD AF E++  IY+ VSK  M+ G+   N
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSAN 191          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.742e-66
Identity = 121/186 (65.05%), Postives = 150/186 (80.65%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGN 607
            A    DY+FKVVLIGDS VGKS +L+RF RNEFSL+SK+TIGVEF TR+L +  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL ELR H D NIV+MLIGNK+DL    AV TED K FA+KE LFF+ETSA+EATN+++AF  VLT+I+ IV+KK +   ++  N
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSN 193          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.707e-65
Identity = 120/187 (64.17%), Postives = 149/187 (79.68%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNS 610
            A    DY+FKVVLIGDS VGK+ +L+RF RNEFSL+SK+TIGVEF TR+L +  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL ELR H D NIV+ML GNK+DL    AV TED K FA+KE LFF+ETSA+EAT +++AF  VLT+I+ IV+KK +   E+  NS
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNS 194          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.076e-63
Identity = 119/191 (62.30%), Postives = 152/191 (79.58%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETG----EDVGNSAVP 619
            DYDYLFK+VLIGDSGVGKSNLLSRFT +EF++ESKSTIGVEFATR++ V+ K IKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ S++EN   WL ELR++ D N+ V LIGNKSDL HL AV T++ K+FA +  + F ETSAL + NVD AF E++  I+++VSK  ++       ++G++  P
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAP 199          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 115/175 (65.71%), Postives = 142/175 (81.14%), Query Frame = 2
Query:   65 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMET 589
            +YLFK+V+IGDS VGKSNLL+R+ RNEF+  SK+TIGVEF T+S+ +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR STFENV RWL EL  H+D  +  MLIGNK DL  + AVS E+GKS AE E LFFMETSAL++TNV  AF  V+ +IY  +S+K + +
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNS 184          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.244e-61
Identity = 117/179 (65.36%), Postives = 146/179 (81.56%), Query Frame = 2
Query:   41 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKK 577
            G RAE+DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    IKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWL+EL DH +  IVVML+GNKSDL     V TE+ + FAE   L F+ETSAL++TNV+ AF  VL +I+  VSK+
Sbjct:    2 GNRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.931e-61
Identity = 112/175 (64.00%), Postives = 144/175 (82.29%), Query Frame = 2
Query:   65 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMET 589
            +YLFK+V+IGDS VGKSNLLSR+ RNEFS  SK+TIGVEF T+S+ ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR +TFE+V RWL EL+ H+D  +  ML+GNK DL ++ AVS E+GK+ AE+E LFF+ETSAL++TNV  AF  V+  IY  VS+K + +
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNS 184          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP1_ORYSJ2.025e-7070.88Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_DICDI5.893e-7067.20Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RB11A_LOTJA1.451e-6869.61Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
YPT31_YEAST3.575e-6767.76GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11D_TOBAC6.742e-6665.05Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_TOBAC5.707e-6564.17Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPT32_YEAST1.076e-6362.30GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
ARA4_ARATH4.522e-6265.71Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RAB25_BOVIN2.244e-6165.36Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
ARA1_ARATH2.931e-6164.00Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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