CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.233e-60
Identity = 114/179 (63.69%), Postives = 144/179 (80.45%), Query Frame = 2
Query:   41 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKK 577
            G   E+DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWL+EL DH +  IVVML+GNKSDL     V TE+ + FAE   L F+ETSAL++TNV+ AF  VL +I+  VSK+
Sbjct:    2 GNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 5.528e-60
Identity = 114/179 (63.69%), Postives = 144/179 (80.45%), Query Frame = 2
Query:   41 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKK 577
            G R ++DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWL+EL DH +  IVVML+GNKSDL     V TE+   FAE   L F+ETSAL++TNV+ AF  VL +I+  VSK+
Sbjct:    2 GNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQ 180          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.220e-60
Identity = 114/179 (63.69%), Postives = 144/179 (80.45%), Query Frame = 2
Query:   41 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKK 577
            G   E+DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWL+EL DH +  IVVML+GNKSDL     V TE+ + FAE   L F+ETSAL++TNV+ AF  VL +I+  VSK+
Sbjct:    2 GNGKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.362e-58
Identity = 106/195 (54.36%), Postives = 149/195 (76.41%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKL 637
            E++ +YLFK+V+IGDS VGKSNLL+RFTRNEF+ ++K+TIGV+F T+S+ +D K I AQ WDTAGQER+RA+TS YYRGAVGA++VYD+T   +F+NV RWL ELR+  + +I++M++GNKSDL     V T++ ++FAE   + F+ETSAL +TNV+ +F  +LT IY +VS K     +D  N  VP++ +KL
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKL 198          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.612e-51
Identity = 96/184 (52.17%), Postives = 138/184 (75.00%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNS 610
            +YDYL K+V+IGDSGVGKSNLLSR+ +NEFS+   STIGVEF+T++L +D K+IK Q+WDTAGQE+Y +IT +YY+GA+GAL+VY++   ++F N+E+WL++ R++   +  +ML+GNKSDL+    VST +GK FAEK  + F+ETSAL++ NV+ AF  +   IY  + K    T  D+ N+
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFKNKTMT-LDINNN 189          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.186e-50
Identity = 99/184 (53.80%), Postives = 125/184 (67.93%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H +PN+ +MLIGNK DL H  AV+TE+G+ FA++  L F+ETSA  A NV+ AF     +IY    KK  +   DV N +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIY----KKIQDGVFDVSNES 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.186e-50
Identity = 99/184 (53.80%), Postives = 125/184 (67.93%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H +PN+ +MLIGNK DL H  AV+TE+G+ FA++  L F+ETSA  A NV+ AF     +IY    KK  +   DV N +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIY----KKIQDGVFDVSNES 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.668e-48
Identity = 96/198 (48.48%), Postives = 126/198 (63.64%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSVKMC 655
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H+  N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A NV+ A+     +IYR + +   +   +     +  ++    SV  C
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPC 200          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.717e-48
Identity = 94/171 (54.97%), Postives = 118/171 (69.01%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK 574
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H+  N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A NV+ AF     +IYR + +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 97/184 (52.72%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A+NV+ AF     +IY    +K  E   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY----EKIQEGVFDINNEA 182          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_HUMAN4.233e-6063.69Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_MOUSE5.528e-6063.69Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_RABIT7.220e-6063.69Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RB11C_DICDI1.362e-5854.36Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI1.612e-5152.17Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTV4_VOLCA5.186e-5053.80GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE5.186e-5053.80GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2B_MOUSE1.668e-4848.48Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN3.717e-4854.97Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_RABIT4.854e-4852.72Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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