CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 89/179 (49.72%), Postives = 121/179 (67.60%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE 595
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ETSA  ATNV+ AF  +  +I + +   A   GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 89/179 (49.72%), Postives = 121/179 (67.60%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE 595
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ETSA  ATNV+ AF  +  +I + +   A   GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 89/179 (49.72%), Postives = 121/179 (67.60%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE 595
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ETSA  ATNV+ AF  +  +I + +   A   GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 89/179 (49.72%), Postives = 121/179 (67.60%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE 595
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ETSA  ATNV+ AF  +  +I + +   A   GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.237e-43
Identity = 89/179 (49.72%), Postives = 121/179 (67.60%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE 595
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ETSA  ATNV+ AF  +  +I + +   A   GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.616e-43
Identity = 88/179 (49.16%), Postives = 121/179 (67.60%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE 595
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R +TS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ETSA  ATNV+ AF  +  +I + +   A   GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 89/203 (43.84%), Postives = 128/203 (63.05%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKA---METGEDVGNSAVPSKERKLMSVKMCLL 661
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W+R + +H   ++  M++GNK D+     VS E G+  A    + FMETSA    NV+NAF  +   I   + KK       G + G    P ++++    +  LL
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL 207          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 89/203 (43.84%), Postives = 128/203 (63.05%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKA---METGEDVGNSAVPSKERKLMSVKMCLL 661
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W+R + +H   ++  M++GNK D+     VS E G+  A    + FMETSA    NV+NAF  +   I   + KK       G + G    P ++++    +  LL
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL 207          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 89/203 (43.84%), Postives = 128/203 (63.05%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKA---METGEDVGNSAVPSKERKLMSVKMCLL 661
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W+R + +H   ++  M++GNK D+     VS E G+  A    + FMETSA    NV+NAF  +   I   + KK       G + G    P ++++    +  LL
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL 207          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 89/203 (43.84%), Postives = 128/203 (63.05%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKA---METGEDVGNSAVPSKERKLMSVKMCLL 661
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W+R + +H   ++  M++GNK D+     VS E G+  A    + FMETSA    NV+NAF  +   I   + KK       G + G    P ++++    +  LL
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL 207          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_PONAB9.473e-4449.72Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_MACFA9.473e-4449.72Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_HUMAN9.473e-4449.72Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN9.473e-4449.72Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1B_MOUSE1.237e-4349.72Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_RAT1.616e-4349.16Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB8A_PONAB2.110e-4343.84Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MACFA2.110e-4343.84Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN2.110e-4343.84Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA2.110e-4343.84Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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