CX295756

Overview
NameCX295756
Unique NameCX295756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: PCAF_PSESB (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (strain B13) GN=pcaF PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 45/141 (31.91%), Postives = 67/141 (47.52%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVT 457
            V+DG+ AL+L S   V + GL+  AK+ G A A  AP      P   + K +    L  +  D  E+NEAF+                            Q +A+  +  +  D  +VN +GGA++LGHPLG SGAR+++T
Sbjct:  256 VNDGSVALILASAEAVKKHGLKARAKVLGMASAGVAPRVMGIGPVPAVRKLLERLNLSVADFDVIELNEAFAA---------------------------QGLAVTRELGIADDDARVNPNGGAIALGHPLGASGARLVLT 369          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: PCAF_PSEPU (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida GN=pcaF PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 48/143 (33.57%), Postives = 67/143 (46.85%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 463
            V+DGAAAL+L S   V + GL   A++ G A    AP      P   + K     G+  S  D  E+NEAF                           + Q +A+  +  +  D  QVN +GGA++LGHPLG SGAR+++T L
Sbjct:  255 VNDGAAALILASAEAVKKHGLTPRARVLGMASGGVAPRVMGIGPVPAVRKLTERLGVAVSDFDVIELNEAF---------------------------ASQGLAVLRELGVADDAPQVNPNGGAIALGHPLGMSGARLVLTAL 370          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 44/147 (29.93%), Postives = 69/147 (46.94%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            +SDGA A++L+      +LG  ++AK          PE     P+  IP  + + GL  + +D +EINEAF+ +                             A+ + +  G+D  +VN  GGA+++GHPLG +GAR   TLL  L+
Sbjct:  271 ISDGAGAVLLMRRSVAEKLGQPILAKFVHCKTVGVPPELMGIGPAYAIPAVLEDLGLTVNDVDVFEINEAFASQ-----------------------------ALFSIQHCGIDESKVNPRGGAIAIGHPLGATGARQFATLLSELK 388          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 49/148 (33.11%), Postives = 70/148 (47.30%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGL--DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVL 472
            ++DGAAA+++ S   V +  L+  AKI         P     AP+  I K +  A L   Q+D  E+NEAF+ +                             A+A  + LGL  D  +VN +GGA++LGHPLG SGAR++ T L  L
Sbjct:  256 INDGAAAVLIASDEAVAQYQLKARAKIIASTTVGIEPRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQ-----------------------------ALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQL 374          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 51/152 (33.55%), Postives = 71/152 (46.71%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +S GA+AL ++S  +   LGL+ +A++     A          P     KA+ +AGL    I   E+NEAF+ ++                             I   K LGL     + VN HGGA++LGHPLGCSGARI  TLL V+R +
Sbjct:  245 LSVGASALAVMSYERAQALGLEPLARVVSTGVAGCDASIMGYGPVPATQKALKSAGLAIDDIQTVELNEAFAAQS-----------------------------IPVLKDLGLRERMDDAVNLHGGAIALGHPLGCSGARICTTLLNVMRQQ 367          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 49/148 (33.11%), Postives = 70/148 (47.30%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGL--DPEQVNAHGGAVSLGHPLGCSGARILVTLLGVL 472
            ++DGAAA+++ S   V +  L+  AKI         P     AP+  I K +  A L   Q+D  E+NEAF+ +                             A+A  + LGL  D  +VN +GGA++LGHPLG SGAR++ T L  L
Sbjct:  256 INDGAAAVLIASDEAVAQYQLKARAKIIASTTVGIEPRIMGFAPAPAIKKLLKQANLTLDQMDVIELNEAFAAQ-----------------------------ALACTRDLGLADDDARVNPNGGAIALGHPLGASGARLVTTALNQL 374          
The following BLAST results are available for this feature:
BLAST of CX295756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PCAF_PSESB1.411e-1231.91Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (s... [more]
PCAF_PSEPU1.411e-1233.57Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida... [more]
THIK_YARLI3.143e-1229.933-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
PCAF_ACIAD1.560e-1133.11Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_CHRSD1.560e-1133.553-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
CATF_ACIAD1.560e-1133.11Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC05075E11SK DroRLeaf1 Citrus clementina cDNA clone C05075E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295756 ID=CX295756; Name=CX295756; organism=Citrus clementina; type=EST; length=672bp
CTTATCAGTTTTGGGTTGTTGGTCTACTGTTGTGGTCAGTGATGGTGCAG
CAGCACTTGTACTGGTGAGTGGAGTGAAGGTGCTTGAGCTTGGTTTGCAA
GTAATAGCTAAGATTAGGGGATTTGCTGACGCAGCTCAGGCTCCAGAGTG
GTTTACAACTGCTCCATCCCTTGTAATACCAAAAGCCATAGCAAATGCTG
GCTTGGAAGCTTCTCAGATTGATTACTATGAAATAAACGAAGCTTTTTCT
GTAAGAAATCATGTTCCTACCTAGTGATGCCGCTAGTATCCAAAGGTTAG
TTTATTACCATTTCATGTTCTAACCTCCTCTTTGCAGGTTGTAGCTATTG
CCAATCAAAAACTGCTTGGTCTTGATCCTGAACAGGTTAATGCGCATGGT
GGAGCCGTATCCCTGGGTCATCCGTTAGGGTGTAGTGGAGCTCGTATCTT
GGTCACATTATTGGGGGTACTGAGACATAAGAAGGGGAAGTACGGGGTTG
GTGGCATCTGCAATGGTGGAGGGGGGGCATCCGCTCTTGTTCTTGAGCTC
ATGCAAGCGGTGCGGGTGGGACATTCCAAGCTATGAATTGATGATGTGTA
CTGACTGTGGAACATCACCTCCTGTGCTATTGTCTCTTATCTCTTTGTTA
AGTTGTCTACTTGAATGAGAAA
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