CX295756

Overview
NameCX295756
Unique NameCX295756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.935e-18
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            VSDGAAA++L    K  ELGL ++  +R +A     P+     P+  IP A+  AGL  + ID +EINEAF+ +                             A+   + LG+  E+VN  GGA++LGHPLGC+GAR +VTLL  L+ +
Sbjct:  278 VSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQ-----------------------------AVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            VSDGAAA++L    K  ELGL ++  +R +A     P+     P+  IP A+  AGL  + ID +EINEAF+ +                             A+   + LG+  E+VN  GGA++LGHPLGC+GAR +VTLL  L+ +
Sbjct:  278 VSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQ-----------------------------ALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            VSDGAAA++L    K  ELGL ++  +R +A     P+     P+  IP A+  AGL  + ID +EINEAF+ +                             A+   + LG+  E+VN  GGA++LGHPLGC+GAR +VTLL  L+ +
Sbjct:  278 VSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQ-----------------------------ALYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRR 397          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.834e-18
Identity = 56/149 (37.58%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++S  K  ELGL  IAK+R  A A   P      P     KA+  AGL  + ID  E+NEAF+ ++                          +  + +  LL L  ++VN +GGA++LGHPLGCSG RI  TLL V+R K
Sbjct:  245 LSDGASAMLMMSAKKAEELGLTPIAKVRSMAVAGCDPAIMGYGPVPATKKALKRAGLTIADIDIVELNEAFAAQS--------------------------IPVLKDLGLLDLVDDKVNLNGGAIALGHPLGCSGTRISTTLLNVMREK 367          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THL_BACSU (Acetyl-CoA acetyltransferase OS=Bacillus subtilis GN=mmgA PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 53/149 (35.57%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            V+DGA A VL+S  K  ELG + +A I GF+           AP   I K +   GL    ID +E+NEAF+                              V +  +K++G D E+VN +GGA++LGHP+G SGARIL+TL+  L+ +
Sbjct:  250 VNDGAGAFVLMSEEKAAELGKRPLATILGFSTTGMPAHELAAAPGFAINKLLKKNGLTVQDIDLFEVNEAFAS-----------------------------VVLTCEKIVGFDLEKVNVNGGAIALGHPIGASGARILMTLVYELKRR 369          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 56/149 (37.58%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            ++DGA++++++S  K  ELGL  IAKIR  A A   P      P     KA+ANAGL    ID  E+NEAF+ +                LP            + +  LL    ++VN +GGA++LGHP GCSG RI  TLL V++ K
Sbjct:  245 ITDGASSMLVMSAAKAAELGLTPIAKIRSMALAGVDPSIMGYGPVPATQKALANAGLSIEDIDVVELNEAFAAQ---------------ALP-----------VLKDLNLLDAMEDKVNLYGGAIALGHPFGCSGTRITGTLLSVMQDK 367          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 54/147 (36.73%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ +V++SG + ++LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMVVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQ---------------ALP-----------VLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++SG + ++LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQ---------------ALP-----------VLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++SG + ++LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQ---------------ALP-----------VLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++SG + ++LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQ---------------ALP-----------VLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
The following BLAST results are available for this feature:
BLAST of CX295756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
THIKA_MOUSE2.935e-1836.913-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIKB_RAT3.834e-1836.913-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKA_RAT3.834e-1836.913-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
FADA_MARMS3.834e-1837.583-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
THL_BACSU1.115e-1735.57Acetyl-CoA acetyltransferase OS=Bacillus subtilis ... [more]
FADA_SACD21.115e-1737.583-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
FADA_PSEOL1.457e-1736.733-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
FADA_PSEPU1.903e-1736.053-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_PSEPK1.903e-1736.053-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP11.903e-1736.053-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]

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Properties
Property NameValue
Genbank descriptionC05075E11SK DroRLeaf1 Citrus clementina cDNA clone C05075E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295756 ID=CX295756; Name=CX295756; organism=Citrus clementina; type=EST; length=672bp
CTTATCAGTTTTGGGTTGTTGGTCTACTGTTGTGGTCAGTGATGGTGCAG
CAGCACTTGTACTGGTGAGTGGAGTGAAGGTGCTTGAGCTTGGTTTGCAA
GTAATAGCTAAGATTAGGGGATTTGCTGACGCAGCTCAGGCTCCAGAGTG
GTTTACAACTGCTCCATCCCTTGTAATACCAAAAGCCATAGCAAATGCTG
GCTTGGAAGCTTCTCAGATTGATTACTATGAAATAAACGAAGCTTTTTCT
GTAAGAAATCATGTTCCTACCTAGTGATGCCGCTAGTATCCAAAGGTTAG
TTTATTACCATTTCATGTTCTAACCTCCTCTTTGCAGGTTGTAGCTATTG
CCAATCAAAAACTGCTTGGTCTTGATCCTGAACAGGTTAATGCGCATGGT
GGAGCCGTATCCCTGGGTCATCCGTTAGGGTGTAGTGGAGCTCGTATCTT
GGTCACATTATTGGGGGTACTGAGACATAAGAAGGGGAAGTACGGGGTTG
GTGGCATCTGCAATGGTGGAGGGGGGGCATCCGCTCTTGTTCTTGAGCTC
ATGCAAGCGGTGCGGGTGGGACATTCCAAGCTATGAATTGATGATGTGTA
CTGACTGTGGAACATCACCTCCTGTGCTATTGTCTCTTATCTCTTTGTTA
AGTTGTCTACTTGAATGAGAAA
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