CX295756

Overview
NameCX295756
Unique NameCX295756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++SG + ++LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQ---------------ALP-----------VLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: ATOB_HAEIN (Acetyl-CoA acetyltransferase OS=Haemophilus influenzae GN=atoB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 59/149 (39.60%), Postives = 73/149 (48.99%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            ++DGAAAL+LVS  K   LGL+ IAKIR +A     P      P     KA+  AG+    ID  E NEAF                           + Q + +   K L LD  + N HGGA++LGHP+G SGARILVTLL  L  K
Sbjct:  250 INDGAAALILVSESKAHALGLKAIAKIRSYASGGVDPSVMGLGPVPATQKALKKAGINLDDIDLIEANEAF---------------------------ASQFLGVG--KDLNLDMNKTNIHGGAIALGHPIGASGARILVTLLHNLIEK 369          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A IR  A A   P      P     KA+  AGL  S ID++E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSISDIDFFELNEAFAAQ---------------ALP-----------VLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIL_MACFA (Acetyl-CoA acetyltransferase, mitochondrial OS=Macaca fascicularis GN=ACAT1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGAAALVL++      L +  +A+I  FADAA  P  F  AP   +   + + GL+   I  +E+NEAFS                             +V +AN K+L +DP++VN +GGAVSLGHP+G SGARI+  L   L+
Sbjct:  286 LNDGAAALVLMTAGAAKRLNVTPLARIVAFADAAVEPIDFPIAPVHAVSMVLKDVGLKKEDIAMWEVNEAFS-----------------------------LVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALK 403          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 54/149 (36.24%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            VSDGA A++L+     ++ GL V+   R FA     P      P++ IP A+  AGLE   ID +EINEAF                           + Q V   N+  LGLDPE++N +GGA+++GHPLG +GAR + TLL  ++ +
Sbjct:  294 VSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAF---------------------------ASQFVYCRNK--LGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRR 413          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIL_HUMAN (Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 55/147 (37.41%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGAAALVL++      L +  +A+I  FADAA  P  F  AP       + + GL+   I  +E+NEAFS                             +V +AN K+L +DP++VN +GGAVSLGHP+G SGARI+  L   L+
Sbjct:  286 LNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFS-----------------------------LVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALK 403          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A IR  A A   P      P     KA+  AGL  + ID++E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSIADIDFFELNEAFAAQ---------------ALP-----------VLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A IR  A A   P      P     KA+  AGL  + ID++E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQ---------------ALP-----------VLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A IR  A A   P      P     KA+  AGL  + ID++E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQ---------------ALP-----------VLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_CITK8 (3-ketoacyl-CoA thiolase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 56/149 (37.58%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGLQ  A+IR  A     P      P      A+  AGL AS ID +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  241 LSDGAAAMLVMSESRARELGLQPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLAASDIDLFEMNEAFAAQ---------------ILP-----------CIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
The following BLAST results are available for this feature:
BLAST of CX295756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
FADA_PSEE41.903e-1736.053-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
ATOB_HAEIN1.903e-1739.60Acetyl-CoA acetyltransferase OS=Haemophilus influe... [more]
FADA_PSESM2.485e-1736.053-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
THIL_MACFA3.245e-1737.41Acetyl-CoA acetyltransferase, mitochondrial OS=Mac... [more]
THIK2_ARATH3.245e-1736.243-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIL_HUMAN5.536e-1737.41Acetyl-CoA acetyltransferase, mitochondrial OS=Hom... [more]
FADA_PSEU27.230e-1735.373-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEPF9.443e-1735.373-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_PSEF51.233e-1635.373-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_CITK81.611e-1637.583-ketoacyl-CoA thiolase OS=Citrobacter koseri (str... [more]

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Properties
Property NameValue
Genbank descriptionC05075E11SK DroRLeaf1 Citrus clementina cDNA clone C05075E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295756 ID=CX295756; Name=CX295756; organism=Citrus clementina; type=EST; length=672bp
CTTATCAGTTTTGGGTTGTTGGTCTACTGTTGTGGTCAGTGATGGTGCAG
CAGCACTTGTACTGGTGAGTGGAGTGAAGGTGCTTGAGCTTGGTTTGCAA
GTAATAGCTAAGATTAGGGGATTTGCTGACGCAGCTCAGGCTCCAGAGTG
GTTTACAACTGCTCCATCCCTTGTAATACCAAAAGCCATAGCAAATGCTG
GCTTGGAAGCTTCTCAGATTGATTACTATGAAATAAACGAAGCTTTTTCT
GTAAGAAATCATGTTCCTACCTAGTGATGCCGCTAGTATCCAAAGGTTAG
TTTATTACCATTTCATGTTCTAACCTCCTCTTTGCAGGTTGTAGCTATTG
CCAATCAAAAACTGCTTGGTCTTGATCCTGAACAGGTTAATGCGCATGGT
GGAGCCGTATCCCTGGGTCATCCGTTAGGGTGTAGTGGAGCTCGTATCTT
GGTCACATTATTGGGGGTACTGAGACATAAGAAGGGGAAGTACGGGGTTG
GTGGCATCTGCAATGGTGGAGGGGGGGCATCCGCTCTTGTTCTTGAGCTC
ATGCAAGCGGTGCGGGTGGGACATTCCAAGCTATGAATTGATGATGTGTA
CTGACTGTGGAACATCACCTCCTGTGCTATTGTCTCTTATCTCTTTGTTA
AGTTGTCTACTTGAATGAGAAA
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