CX295756

Overview
NameCX295756
Unique NameCX295756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.044e-15
Identity = 51/149 (34.23%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++   K   LGL + A+IR  A A          P     KA+A AG+  + +D  E+NEAF+ ++               LP            + +  LL +  E++N +GGA++LGHPLGCSGARI  TL+ ++ HK
Sbjct:  241 LSDGASAMLVMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVNDLDVIELNEAFAAQS---------------LP-----------CVKDLGLLDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEHK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA A++L+     ++ GL ++   R F+     P      P++ IP A+  AGLE + +D +EINEAF                           + Q V   N+  LGLD E++N +GGA+++GHPLG +GAR + TLL  ++ +
Sbjct:  286 LSDGAGAVLLMRRNVAMQKGLPILGVFRTFSAVGVDPAIMGVGPAVAIPAAVKAAGLELNDVDLFEINEAF---------------------------ASQFVYCRNK--LGLDAEKINVNGGAIAIGHPLGATGARCVATLLHEMKRR 405          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHIDS (3-ketoacyl-CoA thiolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGL+  A++R  A     P      P      A+  AGL  S I  +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  241 LSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSVSDIGVFEMNEAFAAQ---------------ILP-----------CIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEU5 (3-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (strain A1501) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LGLQ +A +R  A A   P      P     KA+  AGL    I + E+NEAF+ +                LP            + + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAKDLGLQPMAVVRAMALAGVDPAIMGYGPVPSTQKALKRAGLTMDDISHVELNEAFAAQ---------------ALP-----------VLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ESCF3 (3-ketoacyl-CoA thiolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 54/153 (35.29%), Postives = 79/153 (51.63%), Query Frame = 2
Query:   23 STVVVSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            S+  +SDGAAA++++S  +  ELGL+  A++R  A     P      P      A+  AGL AS I  +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  237 SSSALSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQ---------------ILP-----------CIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ECO57 (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGL+  A++R  A     P      P      A+  AGL  S I  +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  241 LSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSVSDIGVFEMNEAFAAQ---------------ILP-----------CIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            ++DGAAA+V++S  K  ELGL  +A I+ +A+A   P+     P     +A++ A      +D  EINEAF+ +                             A+A  + +G D  +VN +GGA+++GHP+G SG RILVTLL  ++ +
Sbjct:  250 LNDGAAAVVVMSAAKAKELGLTPLATIKSYANAGVDPKVMGMGPVPASKRALSRAEWTPQDLDLMEINEAFAAQ-----------------------------ALAVHQQMGWDTSKVNVNGGAIAIGHPIGASGCRILVTLLHEMKRR 369          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++   K   LGL + A++R  A A          P     KA+A AGL    +D  E+NEAF+ ++               LP            + +  L+ +  ++VN +GGA++LGHPLGCSGARI  TL+ ++ HK
Sbjct:  241 LSDGAAAMLVMEEEKARALGLTIRARVRSMAVAGCDAAIMGYGPVPATQKALARAGLSIQDMDVIELNEAFAAQS---------------LP-----------CVKDLGLMDVVEDKVNLNGGAIALGHPLGCSGARISTTLINLMEHK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THLA_STAAW (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MW2) GN=MW0330 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 463
            ++DGAA ++++S  K  EL ++ +A + GF      P     AP   + KA+  +  E S ID +E+NEAF+ ++                             +A  + L L PE+VN  GGA++LGHP+G SGAR+LVTLL
Sbjct:  250 INDGAAMMLVMSEDKAKELNIEPLAVLDGFGSHGVDPSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQS-----------------------------LAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLL 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THLA_STAAS (Probable acetyl-CoA acyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0330 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 463
            ++DGAA ++++S  K  EL ++ +A + GF      P     AP   + KA+  +  E S ID +E+NEAF+ ++                             +A  + L L PE+VN  GGA++LGHP+G SGAR+LVTLL
Sbjct:  250 INDGAAMMLVMSEDKAKELNIEPLAVLDGFGSHGVDPSIMGIAPVGAVEKALKRSKKELSDIDVFELNEAFAAQS-----------------------------LAVDRELKLPPEKVNVKGGAIALGHPIGASGARVLVTLL 363          
The following BLAST results are available for this feature:
BLAST of CX295756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
FADA_SHESM1.044e-1534.233-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
THIK1_ARATH1.364e-1532.893-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
FADA_SHIDS1.364e-1535.573-ketoacyl-CoA thiolase OS=Shigella dysenteriae se... [more]
FADA_PSEU51.364e-1535.373-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (s... [more]
FADA_ESCF31.364e-1535.293-ketoacyl-CoA thiolase OS=Escherichia fergusonii ... [more]
FADA_ECO571.364e-1535.573-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
THIL_RALEH1.781e-1532.89Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
FADA_SHEAM1.781e-1534.233-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
THLA_STAAW2.326e-1534.27Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]
THLA_STAAS2.326e-1534.27Probable acetyl-CoA acyltransferase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC05075E11SK DroRLeaf1 Citrus clementina cDNA clone C05075E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295756 ID=CX295756; Name=CX295756; organism=Citrus clementina; type=EST; length=672bp
CTTATCAGTTTTGGGTTGTTGGTCTACTGTTGTGGTCAGTGATGGTGCAG
CAGCACTTGTACTGGTGAGTGGAGTGAAGGTGCTTGAGCTTGGTTTGCAA
GTAATAGCTAAGATTAGGGGATTTGCTGACGCAGCTCAGGCTCCAGAGTG
GTTTACAACTGCTCCATCCCTTGTAATACCAAAAGCCATAGCAAATGCTG
GCTTGGAAGCTTCTCAGATTGATTACTATGAAATAAACGAAGCTTTTTCT
GTAAGAAATCATGTTCCTACCTAGTGATGCCGCTAGTATCCAAAGGTTAG
TTTATTACCATTTCATGTTCTAACCTCCTCTTTGCAGGTTGTAGCTATTG
CCAATCAAAAACTGCTTGGTCTTGATCCTGAACAGGTTAATGCGCATGGT
GGAGCCGTATCCCTGGGTCATCCGTTAGGGTGTAGTGGAGCTCGTATCTT
GGTCACATTATTGGGGGTACTGAGACATAAGAAGGGGAAGTACGGGGTTG
GTGGCATCTGCAATGGTGGAGGGGGGGCATCCGCTCTTGTTCTTGAGCTC
ATGCAAGCGGTGCGGGTGGGACATTCCAAGCTATGAATTGATGATGTGTA
CTGACTGTGGAACATCACCTCCTGTGCTATTGTCTCTTATCTCTTTGTTA
AGTTGTCTACTTGAATGAGAAA
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