CX295767

Overview
NameCX295767
Unique NameCX295767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:25..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.103e-67
Identity = 113/147 (76.87%), Postives = 128/147 (87.07%), Query Frame = 2
Query:   56 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            MA KRI KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP DS + GGVF +++HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.103e-67
Identity = 113/147 (76.87%), Postives = 128/147 (87.07%), Query Frame = 2
Query:   56 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            MA KRI KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP DS + GGVF +++HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.103e-67
Identity = 113/147 (76.87%), Postives = 128/147 (87.07%), Query Frame = 2
Query:   56 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            MA KRI KEL DLQ+DPPA CSAGPV DD+FHWQATIMGP DS + GGVF +++HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.607e-65
Identity = 113/147 (76.87%), Postives = 127/147 (86.39%), Query Frame = 2
Query:   56 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            MA KRI+KEL DL +DPPA CSAGPV +DMFHWQATIMGP+DSP+ GG F ++I FP +YPFKPPKV F T+++HPN+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDPLVPEIA +YKTDR KY  TAR WTQKYAM
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.607e-65
Identity = 113/147 (76.87%), Postives = 127/147 (86.39%), Query Frame = 2
Query:   56 MASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            MA KRI+KEL DL +DPPA CSAGPV +DMFHWQATIMGP+DSP+ GG F ++I FP +YPFKPPKV F T+++HPN+NSNGSICLDIL+ QWSPALTISKVLLSI SLL DPNPDDPLVPEIA +YKTDR KY  TAR WTQKYAM
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.798e-51
Identity = 95/156 (60.90%), Postives = 120/156 (76.92%), Query Frame = 2
Query:   35 SLLRNSQMAS---KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            S+ +NS++ S   KRI KEL D+  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:   37 SMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 192          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.798e-51
Identity = 95/156 (60.90%), Postives = 120/156 (76.92%), Query Frame = 2
Query:   35 SLLRNSQMAS---KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            S+ +NS++ S   KRI KEL D+  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:   37 SMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 192          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.389e-50
Identity = 91/145 (62.76%), Postives = 114/145 (78.62%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            ++KRI KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.389e-50
Identity = 91/145 (62.76%), Postives = 114/145 (78.62%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            ++KRI KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F PDYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:   56 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.535e-49
Identity = 90/145 (62.07%), Postives = 113/145 (77.93%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            ++KRI KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
The following BLAST results are available for this feature:
BLAST of CX295767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2D1_MOUSE8.103e-6776.87Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN8.103e-6776.87Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN8.103e-6776.87Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
U2D2B_RAT2.607e-6576.87Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.607e-6576.87Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2E1_MOUSE2.798e-5160.90Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN2.798e-5160.90Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UB2E2_MOUSE1.389e-5062.76Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN1.389e-5062.76Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E3_MOUSE1.535e-4962.07Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC05075F10SK DroRLeaf1 Citrus clementina cDNA clone C05075F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295767 ID=CX295767; Name=CX295767; organism=Citrus clementina; type=EST; length=692bp
GAGGATACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATT
CCCAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAG
GACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCA
TTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTG
TATTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCG
AAGGTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGG
TAGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAA
TATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCA
GATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGC
CAAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTT
AAGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCT
ATTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATT
TGGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCA
ATTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTGCA
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