CX295767

Overview
NameCX295767
Unique NameCX295767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:25..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.794e-35
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            KRI KE + L  +P    SA P  D+  +++  I GP DSPF GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+  +    AR WT+ YA
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.794e-35
Identity = 71/145 (48.97%), Postives = 97/145 (66.90%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 499
            +RI KE + L  +P    SA P  ++M ++   I+GP+ SP+ GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ A+   TA+ WT+ YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.108e-34
Identity = 69/144 (47.92%), Postives = 94/144 (65.28%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K++ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.108e-34
Identity = 66/133 (49.62%), Postives = 89/133 (66.92%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 457
            A KR+  + K LQKDPP   S  P  +++ HW A I GP D+P+ GG F +++HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  ++ +Y
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.059e-34
Identity = 70/149 (46.98%), Postives = 93/149 (62.42%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR-----SWT 481
            S  A KR+ ++ K LQ+DPPA  S  P  +++  W A I GP D+P+ GG F +S+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   + +Y    R     SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.301e-34
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*EGL 511
            S   S+RI KEL D+Q+D  A      + DD+ H +    GP  +P+ GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA    G+
Sbjct:    2 SDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGV 156          
The following BLAST results are available for this feature:
BLAST of CX295767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2N_DICDI4.794e-3550.35Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC36_ARATH4.794e-3548.97Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2N_PONAB1.068e-3448.61Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.068e-3448.61Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.068e-3448.61Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.068e-3448.61Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_RAT3.108e-3447.92Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC3_ARATH3.108e-3449.62Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC1_ARATH4.059e-3446.98Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC1_SCHPO5.301e-3443.87Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionC05075F10SK DroRLeaf1 Citrus clementina cDNA clone C05075F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295767 ID=CX295767; Name=CX295767; organism=Citrus clementina; type=EST; length=692bp
GAGGATACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATT
CCCAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAG
GACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCA
TTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTG
TATTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCG
AAGGTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGG
TAGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAA
TATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCA
GATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGC
CAAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTT
AAGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCT
ATTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATT
TGGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCA
ATTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTGCA
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