CX295767

Overview
NameCX295767
Unique NameCX295767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:25..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.923e-34
Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 481
            S  A KR+ ++ K LQ+DPPA  S  P  +++  W A I GP D+P+ GG F +S+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   + +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 69/149 (46.31%), Postives = 95/149 (63.76%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 481
            S  A KR+ ++ K LQ+DPPA  S  P  +++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  ++ +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 69/149 (46.31%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 481
            S  A KR+ ++ K LQ DPPA  S  P  +++  W A I GP D+P+ GG F +S+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 478
            S  A +R+ ++ K +Q DPPA  SA PVAD++  W A I+GP+D+PF  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.542e-33
Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 478
            S  A +R+ ++ K +Q DPPA  SA P+ D++  W A I+GP+D+PF  G F + + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  RSW
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.014e-33
Identity = 65/150 (43.33%), Postives = 95/150 (63.33%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 484
            S  A +R+ ++ K +Q DPPA  SA PVAD++  W A I+GP+D+PF  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++Y+ +R +Y     ET  +SW +
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.487e-33
Identity = 64/146 (43.84%), Postives = 93/146 (63.70%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 487
            S  A +R+ ++ K LQ+DPP   S  P  +++  W A I GP D+PF  G F ++I F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK +R +YE   ++  ++
Sbjct:    2 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 65/144 (45.14%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            KRI KE++ L +DPP    A P  D++ +++ T+ GP  S + GG F + +  P +YP  PP V F TK++HPN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K +  +    AR WT+KYA+
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.654e-33
Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 2
Query:   62 SKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            +KRI KE++ ++ DP A  +   V++ D+ H + T +GP  +P+ GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  DR  +  TA  WT+ YA
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.306e-32
Identity = 65/148 (43.92%), Postives = 94/148 (63.51%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 478
            S  A +R+ ++ K +Q DPPA  SA PV D++  W A I+GP+D+PF  G F + + F   YP KPP+V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of CX295767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_ARATH6.923e-3446.31Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_WHEAT9.042e-3446.31Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA9.042e-3446.31Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ASPFU1.181e-3344.59Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_TRIHA1.542e-3344.59Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_EMENI2.014e-3343.33Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBCD6_DROME4.487e-3343.84Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC13_SCHPO5.861e-3345.14Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC1_YEAST7.654e-3346.58Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC2_NECHA1.306e-3243.92Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionC05075F10SK DroRLeaf1 Citrus clementina cDNA clone C05075F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295767 ID=CX295767; Name=CX295767; organism=Citrus clementina; type=EST; length=692bp
GAGGATACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATT
CCCAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAG
GACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCA
TTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTG
TATTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCG
AAGGTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGG
TAGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAA
TATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCA
GATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGC
CAAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTT
AAGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCT
ATTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATT
TGGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCA
ATTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTGCA
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