CX296269

Overview
NameCX296269
Unique NameCX296269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length198
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10914 contig Ccv1_Contig10914:354..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX296269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_MAIZE8.908e-20100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO8.908e-20100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]
UBIQ_LUPAL8.908e-20100.00Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS8.908e-20100.00Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU8.908e-20100.00Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN8.908e-20100.00Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_EUPEU8.908e-20100.00Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_DESAN8.908e-20100.00Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA8.908e-20100.00Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_CHLRE8.908e-20100.00Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05138B05SK FerrChloL1 Citrus clementina cDNA clone C05138B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296269 ID=CX296269; Name=CX296269; organism=Citrus clementina; type=EST; length=198bp
ATTCGGCCGAGGCCAAGACCAAGACAAGGAGGGAATCCCTCCCGACCAGC
AGAGGCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGGACCTTGGCC
GATTACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCG
TGGTGGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCAC
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