CX296269

Overview
NameCX296269
Unique NameCX296269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length198
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10914 contig Ccv1_Contig10914:354..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.908e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of CX296269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_BRARA8.908e-20100.00Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA8.908e-20100.00Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA8.908e-20100.00Ubiquitin OS=Avena fatua PE=3 SV=1[more]
UBIQ_ASPOF8.908e-20100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]
UBIQ_ARATH8.908e-20100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_ACECL8.908e-20100.00Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_ACACA8.908e-20100.00Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_YEAST1.984e-1997.83Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_XENLA1.984e-1997.83Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_TETPY1.984e-1997.83Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC05138B05SK FerrChloL1 Citrus clementina cDNA clone C05138B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296269 ID=CX296269; Name=CX296269; organism=Citrus clementina; type=EST; length=198bp
ATTCGGCCGAGGCCAAGACCAAGACAAGGAGGGAATCCCTCCCGACCAGC
AGAGGCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGGACCTTGGCC
GATTACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCG
TGGTGGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCAC
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