CX296269

Overview
NameCX296269
Unique NameCX296269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length198
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10914 contig Ccv1_Contig10914:354..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2 
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX296269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_GEOCY1.984e-1997.83Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_FELCA1.984e-1997.83Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_ENCCU1.984e-1997.83Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_EIMBO1.984e-1997.83Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_DROME1.984e-1997.83Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_DICDI1.984e-1997.83Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_CRYNE1.984e-1997.83Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CRIGR1.984e-1997.83Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_COPCO1.984e-1997.83Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHICK1.984e-1997.83Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05138B05SK FerrChloL1 Citrus clementina cDNA clone C05138B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296269 ID=CX296269; Name=CX296269; organism=Citrus clementina; type=EST; length=198bp
ATTCGGCCGAGGCCAAGACCAAGACAAGGAGGGAATCCCTCCCGACCAGC
AGAGGCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGGACCTTGGCC
GATTACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCG
TGGTGGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCAC
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