CX296269

Overview
NameCX296269
Unique NameCX296269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length198
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10914 contig Ccv1_Contig10914:354..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.774e-19
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-18
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            QDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   31 QDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.888e-18
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 151
            QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.572e-16
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 2
Query:   23 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   32 DKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.682e-16
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 2
Query:   23 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   32 DKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.928e-12
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 166
            ++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:   31 EEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.598e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            ++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   31 EEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.598e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            ++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   31 EEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.598e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            ++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   31 EEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CX296269 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.598e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 2
Query:   20 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 157
            ++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   31 EEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CX296269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
UBIQ_LEIMA5.774e-1995.65Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA3.742e-1893.48Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE4.888e-1897.73Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVAC1.572e-1686.67Ubiquitin-like protein OS=Autographa californica n... [more]
UBIL_NPVOP2.682e-1686.67Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
NEDD8_DROME8.928e-1265.31NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB2_ORYSJ2.598e-1169.57NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ2.598e-1169.57NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_DESAN2.598e-1169.57NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB1_ARATH2.598e-1169.57NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC05138B05SK FerrChloL1 Citrus clementina cDNA clone C05138B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296269 ID=CX296269; Name=CX296269; organism=Citrus clementina; type=EST; length=198bp
ATTCGGCCGAGGCCAAGACCAAGACAAGGAGGGAATCCCTCCCGACCAGC
AGAGGCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGGACCTTGGCC
GATTACAACATCCAAAAAGAATCCACCTTGCATCTTGTCCTCAGGCTCCG
TGGTGGCATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCAC
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