CX296271 | Citrus Genome Database

Overview


Name	CX296271
Unique Name	CX296271
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	710

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9336	contig	Ccv1_Contig9336:541..1249.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.882e-30
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = -3

Query:  499 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 708
            TLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = -3

Query:  301 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 498
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKEST 66

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = -3

Query:  499 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 708
            TLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    7 TLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = -3

Query:  301 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 498
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKEST
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKEST 66

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = -3

Query:  505 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 693
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = -3

Query:  301 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 465
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKEST
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 55

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = -3

Query:  499 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 708
            TLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    7 TLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = -3

Query:  301 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 498
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKEST
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKEST 66

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = -3

Query:  499 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 708
            TLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    7 TLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = -3

Query:  301 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 498
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKEST
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKEST 66

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = -3

Query:  499 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 708
            TLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -3

Query:  313 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 492
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = -3

Query:  499 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 708
            TLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = -3

Query:  313 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 492
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = -3

Query:  499 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 708
            TLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = -3

Query:  313 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 492
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = -3

Query:  499 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 708
            TLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 37/60 (61.67%), Postives = 49/60 (81.67%), Query Frame = -3

Query:  313 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 492
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62

[Close]

BLAST of CX296271 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.638e-19
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = -3

Query:  490 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 708
            TLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    7 TLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 2 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = -3

Query:  313 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 498
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQ 62

The following BLAST results are available for this feature:

BLAST of CX296271 vs. ExPASy Swiss-Prot

BLAST of CX296271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95


Match Name	E-value	Identity	Description
UBIQ_LEIMA	4.882e-30	92.86	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	1.570e-28	90.00	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIQ_LUMTE	8.617e-27	95.24	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
UBIL_NPVOP	8.066e-25	78.57	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	4.003e-24	75.71	Ubiquitin-like protein OS=Autographa californica n...	[more]
RUB1_DESAN	2.969e-19	64.29	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB2_ORYSJ	3.877e-19	62.86	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]
RUB1_ORYSJ	3.877e-19	62.86	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
RUB1_ARATH	3.877e-19	62.86	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DROME	8.638e-19	57.53	NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05138B10SK FerrChloL1 Citrus clementina cDNA clone C05138B10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296271 ID=CX296271; Name=CX296271; organism=Citrus clementina; type=EST; length=710bp
GGAATCTCATCTTTTTCATTGCAAAGTAGAACTGCATTGCAAACCGAAAA
ATCAATTATCACACAAATCAAAACCAACATTATAGTAATATATTTAAACT
AGAGTTTTTTATTCAAAAGCATAACTCGTTCAACAAACAACAACATATAA
AAACAAAAGACCATATTATCAATTATAACTAGTCTTCTTCAAGAAGACAA
AGACAACATAAGGACCATCTTGAACAGAAAAGACATTGACACGGGGCGCA
GTGAATCCCCCTCAGAGACCACCACCTCGGAGACGGAGGACGAGATGGAG
GGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTACGCCCGTCCTCAA
GCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCC
TTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAACTCTCTAC
CTCCAGGGTAATCGTCTTCCCGGTCAATGTCTTAACAAAAATCTGCATGC
CACCCCTCAGACGCAAAACCAGATGAAGAGTTGATTCCTTCTGAATGTTG
TAATCCGCGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAA
ACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA
CGTTGTCGATCGTGTCGGAGCTCTCGACTTCGAGGGTAATCGTCTTTCCC
GTTAGGGTTT