CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 42/129 (32.56%), Postives = 64/129 (49.61%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +G+   + T  +LL  C  L  ++HG ++H       L  +  + S LL +Y   G I EA  +F +   +T   F  NS+I  YA  G  + A+ L+ QME  G + D  TF  +L AC+  GL  +G
Sbjct:  282 HGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTF--NSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLG 408          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +FAS L  C +L  + H   +H L+  + +  N  +SS L+ +YA  G I  + +VF  +         WN++I+G+A  G   +AI ++ +ME E V PD  TF  +L  C+  GL+  G
Sbjct:  167 SFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSI--WNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEG 285          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 42/138 (30.43%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  167 DLESSVQ--NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            DL S +Q  +GI        S+L  C  L AV+HG  +H  I T  ++ +  I + ++ +YA  G I+ A ++F+ + ++  F   WN+L+ G A  G   +++  + +M + G +P+  TF   L AC   GL+  G
Sbjct:  291 DLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFT--WNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEG 426          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN----KGISSKLLRLYATFGLIDEAHQVFD--QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565
            G+     T A+L +    L A+E G ++H     N L+ N      + + L+ +YA  G ID+A+ +F   +M N TA    WN+++ G A+ GE ++ + L+ QM+  G++PD+ TF  VL AC+  GL+
Sbjct:  613 GVLPDEFTIATLAKASSCLTALEQGRQIH----ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA----WNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLV 735          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR88_ARATH (Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565
            T  SLL     L  +  G+++H+++   ++  +  + + L+ +Y+  G I E+ ++FD+M  +      WN++I GYA  G   +A+ L+  M+  G+ P   TF  VL ACA  GL+
Sbjct:  411 TLTSLLSASTGLVNLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIMESRRIFDEMKLKRE-VITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLV 526          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR60_ARATH (Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 39/125 (31.20%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  206 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--VEPDQFTFPRVLKACAGLGLIRVG 574
            + TF  LL +C   +A   G  +  L+    +  +  + + L+ +YA  GL+++A ++F++M ++   +  W ++ISGY   G   +A+ L+ +MEEE   V P++ TF  VL AC+  GL+  G
Sbjct:  328 SSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVKS--WTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVMEG 450          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP436_ARATH7.416e-1132.56Pentatricopeptide repeat-containing protein At5g59... [more]
PP428_ARATH7.416e-1133.06Pentatricopeptide repeat-containing protein At5g50... [more]
PP355_ARATH7.416e-1130.43Pentatricopeptide repeat-containing protein At4g38... [more]
PP347_ARATH7.416e-1133.59Pentatricopeptide repeat-containing protein At4g33... [more]
PPR88_ARATH9.685e-1130.51Pentatricopeptide repeat-containing protein At1g62... [more]
PPR60_ARATH9.685e-1131.20Pentatricopeptide repeat-containing protein At1g26... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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