CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13 Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TF +L+ C + G ++H I + + +++ L+ LY + G +D A +VFD+M R+ + WNS+I GEY+ A+ L+ +M+ EPD +T VL ACAGLG + +G Sbjct: 153 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVS--WNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 270
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13 Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T +L C QL A+ G +H L+ + + +S+ L+ +YA G I EA ++FD M+ + WN++ISGY G+ ++A+ ++++M G+ P TF VL AC+ GL++ G Sbjct: 422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT--WNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEG 540
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13 Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + +GI+ TF L C + +A +GI++H LI K+ + + L+ YA G +D A +VFD+MS R + W S+I GYA +DA+ L+F+M +E V P+ T V+ ACA L + G Sbjct: 126 MNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS--WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG 255
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13 Identity = 40/138 (28.99%), Postives = 77/138 (55.80%), Query Frame = 2 Query: 152 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565 +++I E +Q + + T S L C Q+ A+E G +H I + +R N ++S L+ +Y+ G ++++ +VF+ + R F W+++I G A G +A+ ++++M+E V+P+ TF V AC+ GL+ Sbjct: 347 EALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV--WSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 482
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13 Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = 2 Query: 119 KAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 547 K F +LQ+ ++ DL + ASLL C ++A G+++H ++ + + + KL+ Y+ F L +EA + + ++ PWN LI+ YA+ +E+ IA Y +M +G+ PD FT+P VLKAC Sbjct: 24 KTFSLLRLQSSSAVSDDLV----------LHSAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIE--NSDILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKAC 154
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13 Identity = 42/134 (31.34%), Postives = 69/134 (51.49%), Query Frame = 2 Query: 137 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 538 K ALDS+I+ + I+ TF +L C ++ G++LH L+ + + I + LL +Y+ G D+A ++F MS A WN +ISGY + G E+++ +++M GV PD TF +L Sbjct: 216 KCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR--ADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLL 347 HSP 2 Score: 68.5514 bits (166), Expect = 2.549e-11 Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = 2 Query: 224 LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 556 LL+ C + G ++H + N + + ++L +YA G + ++F ++ R + PWNS+IS + G A+A YF+M GV PD TFP ++KAC L Sbjct: 41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 151
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP255_ARATH (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13 Identity = 41/127 (32.28%), Postives = 73/127 (57.48%), Query Frame = 2 Query: 194 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 I V F++LL +C L ++ G ++H L + N+ + S L+ +Y+ G+I+ A + F Q+S++ + WN++I GYA+ G + ++ L+ QM + V+ D TF +L AC+ GLI+ G Sbjct: 404 IKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHS-TVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEG 529
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13 Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +GI + S++ C L ++ +H I N L I++ L+ +YA G +D VF++M R + W+S+I+ + GE DA++L+ +M++E VEP++ TF VL C+ GL+ G Sbjct: 338 SGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVS--WSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13 Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 2 Query: 323 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +KL+ ++FG I A QVFD + F PWN++I GY+ ++DA+ +Y M+ V PD FTFP +LKAC+GL +++G Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIF--PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138 HSP 2 Score: 70.0922 bits (170), Expect = 8.760e-12 Identity = 45/161 (27.95%), Postives = 74/161 (45.96%), Query Frame = 2 Query: 92 SPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 SP +L N K I + + T + S + C Q+ ++E ++ + + R + ISS L+ ++A G ++ A VFD+ +R W+++I GY G +AI+LY ME GV P+ TF +L AC G++R G Sbjct: 285 SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV--WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13 Identity = 39/134 (29.10%), Postives = 70/134 (52.24%), Query Frame = 2 Query: 173 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 E +++ + +T +S+L C + A+ G ++H + N + N + L+ LY G ++EA VF+++ + + W ++I+G+A G DA L++ M V P++ TF VL ACA GL+ G Sbjct: 295 EEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYT--WTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEG 426 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |