CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TF  +L+ C  +     G ++H  I  +    +  +++ L+ LY + G +D A +VFD+M  R+  +  WNS+I      GEY+ A+ L+ +M+    EPD +T   VL ACAGLG + +G
Sbjct:  153 TFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVS--WNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVLSACAGLGSLSLG 270          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP341_ARATH (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T   +L  C QL A+  G  +H L+ +     +  +S+ L+ +YA  G I EA ++FD M+ +      WN++ISGY   G+ ++A+ ++++M   G+ P   TF  VL AC+  GL++ G
Sbjct:  422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT--WNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEG 540          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + +GI+    TF   L  C + +A  +GI++H LI      K+  + + L+  YA  G +D A +VFD+MS R   +  W S+I GYA     +DA+ L+F+M  +E V P+  T   V+ ACA L  +  G
Sbjct:  126 MNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS--WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETG 255          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 40/138 (28.99%), Postives = 77/138 (55.80%), Query Frame = 2
Query:  152 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565
            +++I   E  +Q  + +   T  S L  C Q+ A+E G  +H  I  + +R N  ++S L+ +Y+  G ++++ +VF+ +  R  F   W+++I G A  G   +A+ ++++M+E  V+P+  TF  V  AC+  GL+
Sbjct:  347 EALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV--WSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLV 482          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 44/143 (30.77%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  119 KAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 547
            K F   +LQ+  ++  DL             + ASLL  C  ++A   G+++H    ++ +  +  +  KL+  Y+ F L +EA  + +  ++      PWN LI+ YA+   +E+ IA Y +M  +G+ PD FT+P VLKAC
Sbjct:   24 KTFSLLRLQSSSAVSDDLV----------LHSAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIE--NSDILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKAC 154          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 42/134 (31.34%), Postives = 69/134 (51.49%), Query Frame = 2
Query:  137 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 538
            K  ALDS+I+       + I+    TF  +L  C     ++ G++LH L+  + +     I + LL +Y+  G  D+A ++F  MS   A    WN +ISGY + G  E+++  +++M   GV PD  TF  +L
Sbjct:  216 KCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR--ADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLL 347          

HSP 2 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 35/111 (31.53%), Postives = 57/111 (51.35%), Query Frame = 2
Query:  224 LLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 556
            LL+ C     +  G ++H  +  N +  +     ++L +YA  G   +  ++F ++  R +   PWNS+IS +   G    A+A YF+M   GV PD  TFP ++KAC  L
Sbjct:   41 LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVAL 151          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP255_ARATH (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 41/127 (32.28%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  194 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            I V    F++LL +C  L  ++ G ++H L   +    N+ + S L+ +Y+  G+I+ A + F Q+S++ +    WN++I GYA+ G  + ++ L+ QM  + V+ D  TF  +L AC+  GLI+ G
Sbjct:  404 IKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHS-TVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEG 529          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 40/129 (31.01%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +GI     +  S++  C  L  ++    +H  I  N L     I++ L+ +YA  G +D    VF++M  R   +  W+S+I+  +  GE  DA++L+ +M++E VEP++ TF  VL  C+  GL+  G
Sbjct:  338 SGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVS--WSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEG 464          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.645e-13
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  323 SKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +KL+   ++FG I  A QVFD +     F  PWN++I GY+    ++DA+ +Y  M+   V PD FTFP +LKAC+GL  +++G
Sbjct:   57 TKLIHASSSFGDITFARQVFDDLPRPQIF--PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138          

HSP 2 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 45/161 (27.95%), Postives = 74/161 (45.96%), Query Frame = 2
Query:   92 SPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            SP  +L N       K       I      +   +   T +  S +  C Q+ ++E    ++  +  +  R +  ISS L+ ++A  G ++ A  VFD+  +R      W+++I GY   G   +AI+LY  ME  GV P+  TF  +L AC   G++R G
Sbjct:  285 SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV--WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 443          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 39/134 (29.10%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  173 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            E  +++ +    +T +S+L  C  + A+  G ++H  +  N +  N    + L+ LY   G ++EA  VF+++  +  +   W ++I+G+A  G   DA  L++ M    V P++ TF  VL ACA  GL+  G
Sbjct:  295 EEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYT--WTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEG 426          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PPR85_ARATH2.085e-1333.88Pentatricopeptide repeat-containing protein At1g59... [more]
PP341_ARATH2.085e-1333.06Pentatricopeptide repeat-containing protein At4g30... [more]
PP249_ARATH2.085e-1334.85Pentatricopeptide repeat-containing protein At3g22... [more]
PP175_ARATH2.085e-1328.99Pentatricopeptide repeat-containing protein At2g29... [more]
PP116_ARATH2.085e-1330.77Pentatricopeptide repeat-containing protein At1g71... [more]
PP333_ARATH2.723e-1331.34Pentatricopeptide repeat-containing protein At4g21... [more]
PP255_ARATH2.723e-1332.28Putative pentatricopeptide repeat-containing prote... [more]
PP311_ARATH4.645e-1331.01Pentatricopeptide repeat-containing protein At4g14... [more]
PP224_ARATH4.645e-1341.67Pentatricopeptide repeat-containing protein At3g12... [more]
PPR75_ARATH6.067e-1329.10Pentatricopeptide repeat-containing protein At1g50... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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