CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP423_ARATH (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  269 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +LH  +  +    N  +S+ L+R Y T   +++AH+VFD+M +    +  WNSL+SGY + G +++ I L+ ++    V P++F+F   L ACA L L  +G
Sbjct:   76 QLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVIS--WNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLSPLG 175          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TF S+++ C  L   E G  ++  I       +  + + L+ +Y+  GL+  A QVFD+M  R   +  WNSLISGY+  G YE+A+ +Y +++   + PD FT   VL A   L +++ G
Sbjct:  108 TFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS--WNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 41/130 (31.54%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + G  +   +F+S L TC  + A+E G +LH  +          + + LL +Y   G I+EA+ +F +M+ +   +  WN++I+GY+  G  E A+  +  M+ EG++PD  T   VL AC+  GL+  G
Sbjct:  402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS--WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 529          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 43/146 (29.45%), Postives = 81/146 (55.48%), Query Frame = 2
Query:  143 QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP-TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + +   + D ESS    + V+ E    LL+   + K +E G K+H+L+  +  LR +  + ++++ +YA  G  D++  VFD + ++  F   WN++IS Y+    Y++ +  + +M     + PD FT+P V+KACAG+  + +G
Sbjct:   64 RTVQEFVGDDESSSDAFLLVR-EALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQ--WNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIG 206          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 37/113 (32.74%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  209 ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 547
            +T+  L+  C    ++   +++HR I  N   ++  +++KL+ +Y+  G +D A +VFD+   RT +   WN+L       G  E+ + LY++M   GVE D+FT+  VLKAC
Sbjct:   78 QTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYV--WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188          

HSP 2 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 49/154 (31.82%), Postives = 76/154 (49.35%), Query Frame = 2
Query:  113 NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            N KAF    L+    ++++ + S  N +T+      S+L+ C  L A+E G  +H  I    L     + S L+ +Y   G ++   +VFD+M +R   +  WNSLIS Y   G  + AI ++ +M   G  P   TF  VL AC+  GL+  G
Sbjct:  261 NGKAFEA--LRTFREMMRETKDSSPNSVTM-----VSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVS--WNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEG 405          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP127_ARATH (Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 2
Query:  185 QNGITVQTETF----------------ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            QNG TV+T  +                +S++  C  + ++E G ++        L  ++ +SS L+ LY   G ++   +VFD M        PWNS+ISGYA  G+  +AI L+ +M   G+ P Q TF  VL AC   GL+  G
Sbjct:  427 QNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEV--PWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEG 570          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP121_ARATH (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  158 IIQD----LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565
            +IQD        V +G T+ +   +S+L+          G ++H  I    L     + S LL +Y+ FG ID+  + F Q++     A  W +LI+ YA+ G+  +A+ +Y  M+E+G +PD+ TF  VL AC+  GL+
Sbjct:  632 LIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIA--WTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLV 769          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR55_ARATH (Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  218 ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 556
            ASLL TC        G +LH    ++ L  +  +  KL+  Y+ F L+DEA  + +  ++      PWN LI  Y     +++++++Y +M  +G+  D+FT+P V+KACA L
Sbjct:   87 ASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITE--NSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAAL 197          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 42/148 (28.38%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  131 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            K ++   +  +      ++N I        ++ + C  LK    G  +H  +  + L     ++S L  +Y   G++D+A +VFD++ +R A A  WN+L+ GY + G+ E+AI L+  M ++GVEP + T    L A A +G +  G
Sbjct:  148 KCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVA--WNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEG 293          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T A +L  C  L A + G ++H  I  N    ++ +++ L+ +YA  G +  AH +FD ++++   +  W  +I+GY   G  ++AIAL+ QM + G+E D+ +F  +L AC+  GL+  G
Sbjct:  501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS--WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619          

HSP 2 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +GI +   T  S+   C   + +  G  +H +       +     + LL +Y+  G +D A  VF +MS+R+  ++   S+I+GYA  G   +A+ L+ +MEEEG+ PD +T   VL  CA   L+  G
Sbjct:  290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY--TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 416          

HSP 3 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 38/131 (29.01%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + +G+ + + TF+ + ++   L++V  G +LH  I  +   +   + + L+  Y     +D A +VFD+M+ R   +  WNS+I+GY   G  E  ++++ QM   G+E D  T   V   CA   LI +G
Sbjct:  187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS--WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP423_ARATH6.067e-1334.31Putative pentatricopeptide repeat-containing prote... [more]
PP210_ARATH6.067e-1333.88Pentatricopeptide repeat-containing protein At3g03... [more]
PP301_ARATH7.923e-1331.54Pentatricopeptide repeat-containing protein At4g02... [more]
PPR48_ARATH1.035e-1229.45Pentatricopeptide repeat-containing protein At1g18... [more]
PP265_ARATH1.035e-1232.74Pentatricopeptide repeat-containing protein At3g46... [more]
PP127_ARATH1.035e-1232.19Putative pentatricopeptide repeat-containing prote... [more]
PP121_ARATH1.035e-1231.43Pentatricopeptide repeat-containing protein At1g74... [more]
PPR55_ARATH1.351e-1232.74Pentatricopeptide repeat-containing protein At1g22... [more]
PP431_ARATH1.351e-1228.38Pentatricopeptide repeat-containing protein At5g55... [more]
PP320_ARATH1.351e-1232.23Pentatricopeptide repeat-containing protein At4g18... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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