CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP423_ARATH (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13 Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 2 Query: 269 KLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +LH + + N +S+ L+R Y T +++AH+VFD+M + + WNSL+SGY + G +++ I L+ ++ V P++F+F L ACA L L +G Sbjct: 76 QLHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVIS--WNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLSPLG 175
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13 Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TF S+++ C L E G ++ I + + + L+ +Y+ GL+ A QVFD+M R + WNSLISGY+ G YE+A+ +Y +++ + PD FT VL A L +++ G Sbjct: 108 TFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS--WNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13 Identity = 41/130 (31.54%), Postives = 70/130 (53.85%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + G + +F+S L TC + A+E G +LH + + + LL +Y G I+EA+ +F +M+ + + WN++I+GY+ G E A+ + M+ EG++PD T VL AC+ GL+ G Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVS--WNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKG 529
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 43/146 (29.45%), Postives = 81/146 (55.48%), Query Frame = 2 Query: 143 QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIP-TNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + + + D ESS + V+ E LL+ + K +E G K+H+L+ + LR + + ++++ +YA G D++ VFD + ++ F WN++IS Y+ Y++ + + +M + PD FT+P V+KACAG+ + +G Sbjct: 64 RTVQEFVGDDESSSDAFLLVR-EALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQ--WNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIG 206
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 37/113 (32.74%), Postives = 64/113 (56.64%), Query Frame = 2 Query: 209 ETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 547 +T+ L+ C ++ +++HR I N ++ +++KL+ +Y+ G +D A +VFD+ RT + WN+L G E+ + LY++M GVE D+FT+ VLKAC Sbjct: 78 QTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYV--WNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188 HSP 2 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 49/154 (31.82%), Postives = 76/154 (49.35%), Query Frame = 2 Query: 113 NQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 N KAF L+ ++++ + S N +T+ S+L+ C L A+E G +H I L + S L+ +Y G ++ +VFD+M +R + WNSLIS Y G + AI ++ +M G P TF VL AC+ GL+ G Sbjct: 261 NGKAFEA--LRTFREMMRETKDSSPNSVTM-----VSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVS--WNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEG 405
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP127_ARATH (Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 2 Query: 185 QNGITVQTETF----------------ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 QNG TV+T + +S++ C + ++E G ++ L ++ +SS L+ LY G ++ +VFD M PWNS+ISGYA G+ +AI L+ +M G+ P Q TF VL AC GL+ G Sbjct: 427 QNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEV--PWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEG 570
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP121_ARATH (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12 Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = 2 Query: 158 IIQD----LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565 +IQD V +G T+ + +S+L+ G ++H I L + S LL +Y+ FG ID+ + F Q++ A W +LI+ YA+ G+ +A+ +Y M+E+G +PD+ TF VL AC+ GL+ Sbjct: 632 LIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIA--WTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLV 769
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR55_ARATH (Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12 Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 2 Query: 218 ASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGL 556 ASLL TC G +LH ++ L + + KL+ Y+ F L+DEA + + ++ PWN LI Y +++++++Y +M +G+ D+FT+P V+KACA L Sbjct: 87 ASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITE--NSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAAL 197
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12 Identity = 42/148 (28.38%), Postives = 75/148 (50.68%), Query Frame = 2 Query: 131 KTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 K ++ + + ++N I ++ + C LK G +H + + L ++S L +Y G++D+A +VFD++ +R A A WN+L+ GY + G+ E+AI L+ M ++GVEP + T L A A +G + G Sbjct: 148 KCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVA--WNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEG 293
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12 Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T A +L C L A + G ++H I N ++ +++ L+ +YA G + AH +FD ++++ + W +I+GY G ++AIAL+ QM + G+E D+ +F +L AC+ GL+ G Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVS--WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 619 HSP 2 Score: 70.4774 bits (171), Expect = 6.707e-12 Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +GI + T S+ C + + G +H + + + LL +Y+ G +D A VF +MS+R+ ++ S+I+GYA G +A+ L+ +MEEEG+ PD +T VL CA L+ G Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY--TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG 416 HSP 3 Score: 68.9366 bits (167), Expect = 1.952e-11 Identity = 38/131 (29.01%), Postives = 68/131 (51.91%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + +G+ + + TF+ + ++ L++V G +LH I + + + + L+ Y +D A +VFD+M+ R + WNS+I+GY G E ++++ QM G+E D T V CA LI +G Sbjct: 187 MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVIS--WNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |