CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 547
            V   + +   T  S+L  C  LK +E G  +H+L+    L     + + L+ +Y   G +DEA  VFD+M  R      W  +I+GY E G+ E+A+ L   M+ EGV P+  T   ++  C
Sbjct:  210 VNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVIT--WTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVC 329          

HSP 2 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 37/121 (30.58%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T+  + +   +LK+++ G+ +H  I  +   ++K + + LL +Y  FG ++ A  VFD M NR   +  WN++ISGY   G   DA+ ++  M  E V+ D  T   +L  C  L  + +G
Sbjct:  119 TYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVIS--WNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMG 237          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 42/138 (30.43%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  161 IQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++  +  V  G+     TF S+L  C QL A+E G ++H  I  + L  ++ + S LL +Y+  G   EA ++F+ +  +   +  W  +IS Y   G+  +A+  + +M++ G++PD  T   VL AC   GLI  G
Sbjct:  395 VEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVS--WTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEG 530          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 37/117 (31.62%), Postives = 68/117 (58.12%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 562
            T  ++L  C  L     G +LH    T+ + +N  + + L+ +YA  G++DEA+ VF  MS +   +  WN++++GY+++G +EDA+ L+ +M+EE ++ D  T+   +   A  GL
Sbjct:  231 TLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS--WNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 42/132 (31.82%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVG 574
            +Q G  + +  +A++L     +  +E G+++H       L  +  + S L+ +Y+  G +D A + F+ M  R +++  WNS+ISGYA  G+ E+A+ L+  M+ +G   PD  TF  VL AC+  GL+  G
Sbjct:  611 LQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS--WNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 740          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP348_ARATH (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 42/127 (33.07%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  194 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            I     T+ S+L  C Q  A+  G+KLH  +  N L  +  + + L  +Y   G +++A  +F Q+    +   PWN+LI+ +   G  E A+ L+ +M +EGV+PD  TF  +L AC+  GL+  G
Sbjct:  447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV--PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 571          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +G      +  S+L  C    A+  G K+H  I    L  N  + + L+ +YA  G +++A  VF+ M +R   +  W ++IS Y   G   DA+AL+ ++++ G+ PD   F   L AC+  GL+  G
Sbjct:  303 DGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS--WTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEG 429          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 40/136 (29.41%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  173 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNL--LRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +  +++G T    T  S+L  C  L A++ G  +H  I   L  +     + + L+ +YA  G I+ AHQVF+ + +++  +  WN++I G+A  G  + +  L+ +M + G++PD  TF  +L AC+  G++ +G
Sbjct:  356 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS--WNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489          

HSP 2 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 36/131 (27.48%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++  +     T  +++  C Q  ++E G ++H  I  +    N  I + L+ LY+  G ++ A  +F+++  +   +  WN+LI GY  +  Y++A+ L+ +M   G  P+  T   +L ACA LG I +G
Sbjct:  258 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS--WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  179 SVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +++N ++V   TF+S L  C  L +++ G+++H L       K   +S+ L+ +YA  G I  A  VF++M   T     WN+LISGY+  G    A+ +   M++   +P+  TF  VL  C+  GLI  G
Sbjct:  440 ALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEME--TIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQG 569          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 40/122 (32.79%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEE-EGVEPDQFTFPRVLKACAGLGLIRVG 574
            T  + L  C Q+ A+E G  +H  + ++ +R N  + + L+ +Y+  G ++EA  VF+    +   A  WN++I+GYA  G  +DA+ L+ +M+   G++P   TF   L+ACA  GL+  G
Sbjct:  261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVA--WNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEG 380          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 43/129 (33.33%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + +     TFA++L+      ++  G +LH  I  +   +N    S L+ +YA  G I +A QVF++M +R A +  WN+LIS +A+ G+ E AI  + +M E G++PD  +   VL AC+  G +  G
Sbjct:  446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS--WNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQG 572          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP405_ARATH1.765e-1231.97Pentatricopeptide repeat-containing protein At5g39... [more]
PP398_ARATH1.765e-1230.43Pentatricopeptide repeat-containing protein At5g27... [more]
PP390_ARATH1.765e-1231.62Pentatricopeptide repeat-containing protein At5g16... [more]
PP373_ARATH1.765e-1231.82Putative pentatricopeptide repeat-containing prote... [more]
PP348_ARATH2.305e-1233.07Pentatricopeptide repeat-containing protein At4g33... [more]
PP271_ARATH2.305e-1230.23Putative pentatricopeptide repeat-containing prote... [more]
PPR21_ARATH3.011e-1229.41Pentatricopeptide repeat-containing protein At1g08... [more]
PP377_ARATH3.011e-1232.58Putative pentatricopeptide repeat-containing prote... [more]
PP354_ARATH3.011e-1232.79Pentatricopeptide repeat-containing protein At4g37... [more]
PP206_ARATH3.011e-1233.33Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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