CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 36/134 (26.87%), Postives = 67/134 (50.00%), Query Frame = 2 Query: 173 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 E VQ G+ + F S+L C L A+ G ++H I + + + S L+ +Y + A VFD+M + + W +++ GY + G E+A+ ++ M+ G++PD +T + + ACA + + G Sbjct: 260 EMKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS--WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390 HSP 2 Score: 71.633 bits (174), Expect = 3.011e-12 Identity = 38/130 (29.23%), Postives = 70/130 (53.85%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++GI T + C + ++E G + H T+ L +S+ L+ LY G ID++ ++F++M+ R A + W +++S YA+ G + I L+ +M + G++PD T V+ AC+ GL+ G Sbjct: 364 RSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS--WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG 491
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12 Identity = 40/128 (31.25%), Postives = 64/128 (50.00%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 G TF SL+ C + A+ G +LH I KN +++ L+ +YA G I ++ +VF ++ +R W S++ GY G +A+ L+ +M G+ PD+ F VL AC GL+ G Sbjct: 308 GFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLV-SWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKG 434
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP309_ARATH (Pentatricopeptide repeat-containing protein At4g14170 OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12 Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565 +G + + SLL C QL A++HG +H + + + +Y ++D AH VF MS R + W+SLI GY G+ + L+ +M +EG+EP+ TF VL ACA GL+ Sbjct: 229 SGFALDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVIS--WSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLV 352
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12 Identity = 32/97 (32.99%), Postives = 59/97 (60.82%), Query Frame = 2 Query: 284 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + + KN+ S+ L+ Y G +++A +F+QM + + W ++I GY++ Y +AIA++++M EEG+ PD+ T V+ ACA LG++ +G Sbjct: 212 LANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIIS--WTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG 306
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP303_ARATH (Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12 Identity = 39/127 (30.71%), Postives = 66/127 (51.97%), Query Frame = 2 Query: 158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 538 ++ S + N + T TF SLL+ C L+ + G+ +H+ + N + ISS L+ LYA FGL+ A +VF++M R W ++I Y+ G +A +L +M +G++P T +L Sbjct: 30 VLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERD--VVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEML 154
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12 Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 GI + S+L +C QL ++E G +H K G+ + L+ +Y+ G+I +A Q+F QM + + W+++ISGYA G AI + +M+ V+P+ TF +L AC+ +G+ + G Sbjct: 236 GIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVIS--WSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEG 361
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12 Identity = 39/131 (29.77%), Postives = 69/131 (52.67%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++ G+ T A++L C + A+ GI++H I N ++ ++ I + L+ +YA G +D A VF M+++ + W ++I G+A G + AI + QM G +PD+ F VL AC + +G Sbjct: 285 LEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILS--WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLG 413 HSP 2 Score: 68.9366 bits (167), Expect = 1.952e-11 Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 305 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +N G S L++ Y G ++ A Q+F+ M + + W +LI+G+++ G+YE AI+ YF+M E+G++P+++T VL AC+ G + G Sbjct: 225 RNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVS--WTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSG 312
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12 Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 499 T+ +L++ C Q +A+E G K+H I T+ I ++LLR+YA G + +A +VFD+M NR + WN +++GYAE+G E+A L+ +M E+ Sbjct: 87 TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCS--WNVMVNGYAEVGLLEEARKLFDEMTEK 180
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP268_ARATH (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12 Identity = 38/131 (29.01%), Postives = 64/131 (48.85%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 V + ++ T + +L+ C Q + +G LH L + + S LL +Y G ID++ +VF +M R A W ++I+G G Y++ + + +M D +TF LKACAGL ++ G Sbjct: 100 VDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVT--WTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYG 228
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12 Identity = 38/136 (27.94%), Postives = 73/136 (53.68%), Query Frame = 2 Query: 158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565 I ++++S+ G+ T S+L C L ++E G + I N ++ + + + L+ +Y G ++A +VF M R F W +++ G A G+ ++AI ++FQM++ ++PD T+ VL AC G++ Sbjct: 355 IFREMQSA---GMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT--WTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMV 485 HSP 2 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 550 ++ G+T + TF LL + A+ G KLH + L N + + L+++Y+ GL+D A VFD+ F+ WN +ISGY + EYE++I L +ME V P T VL AC+ Sbjct: 126 LKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS--WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |