CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 36/134 (26.87%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  173 ESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            E  VQ G+ +    F S+L  C  L A+  G ++H  I     + +  + S L+ +Y     +  A  VFD+M  +   +  W +++ GY + G  E+A+ ++  M+  G++PD +T  + + ACA +  +  G
Sbjct:  260 EMKVQ-GLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS--WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390          

HSP 2 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 38/130 (29.23%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++GI     T    +  C  + ++E G + H    T+ L     +S+ L+ LY   G ID++ ++F++M+ R A +  W +++S YA+ G   + I L+ +M + G++PD  T   V+ AC+  GL+  G
Sbjct:  364 RSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVS--WTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKG 491          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 40/128 (31.25%), Postives = 64/128 (50.00%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            G      TF SL+  C  + A+  G +LH  I      KN  +++ L+ +YA  G I ++ +VF ++ +R      W S++ GY   G   +A+ L+ +M   G+ PD+  F  VL AC   GL+  G
Sbjct:  308 GFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLV-SWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKG 434          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP309_ARATH (Pentatricopeptide repeat-containing protein At4g14170 OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565
            +G  + +    SLL  C QL A++HG  +H             + + +  +Y    ++D AH VF  MS R   +  W+SLI GY   G+   +  L+ +M +EG+EP+  TF  VL ACA  GL+
Sbjct:  229 SGFALDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVIS--WSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLV 352          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 32/97 (32.99%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  284 IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +   +  KN+  S+ L+  Y   G +++A  +F+QM  +   +  W ++I GY++   Y +AIA++++M EEG+ PD+ T   V+ ACA LG++ +G
Sbjct:  212 LANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIIS--WTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIG 306          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP303_ARATH (Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 39/127 (30.71%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVL 538
            ++    S + N +   T TF SLL+ C  L+ +  G+ +H+ +  N    +  ISS L+ LYA FGL+  A +VF++M  R      W ++I  Y+  G   +A +L  +M  +G++P   T   +L
Sbjct:   30 VLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERD--VVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEML 154          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            GI     +  S+L +C QL ++E G  +H         K  G+ + L+ +Y+  G+I +A Q+F QM  +   +  W+++ISGYA  G    AI  + +M+   V+P+  TF  +L AC+ +G+ + G
Sbjct:  236 GIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVIS--WSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEG 361          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 39/131 (29.77%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++ G+     T A++L  C +  A+  GI++H  I  N ++ ++ I + L+ +YA  G +D A  VF  M+++   +  W ++I G+A  G +  AI  + QM   G +PD+  F  VL AC     + +G
Sbjct:  285 LEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILS--WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLG 413          

HSP 2 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  305 KNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +N G  S L++ Y   G ++ A Q+F+ M  +   +  W +LI+G+++ G+YE AI+ YF+M E+G++P+++T   VL AC+  G +  G
Sbjct:  225 RNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVS--WTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSG 312          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEE 499
            T+ +L++ C Q +A+E G K+H  I T+       I ++LLR+YA  G + +A +VFD+M NR   +  WN +++GYAE+G  E+A  L+ +M E+
Sbjct:   87 TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCS--WNVMVNGYAEVGLLEEARKLFDEMTEK 180          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP268_ARATH (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 38/131 (29.01%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            V + ++  T   + +L+ C Q   + +G  LH       L  +  + S LL +Y   G ID++ +VF +M  R A    W ++I+G    G Y++ +  + +M       D +TF   LKACAGL  ++ G
Sbjct:  100 VDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVT--WTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYG 228          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 38/136 (27.94%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565
            I ++++S+   G+     T  S+L  C  L ++E G  +   I  N ++ +  + + L+ +Y   G  ++A +VF  M  R  F   W +++ G A  G+ ++AI ++FQM++  ++PD  T+  VL AC   G++
Sbjct:  355 IFREMQSA---GMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFT--WTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMV 485          

HSP 2 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLK-AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACA 550
            ++ G+T  + TF  LL    +   A+  G KLH  +    L  N  + + L+++Y+  GL+D A  VFD+      F+  WN +ISGY  + EYE++I L  +ME   V P   T   VL AC+
Sbjct:  126 LKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS--WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP108_ARATH3.011e-1226.87Putative pentatricopeptide repeat-containing prote... [more]
PPR83_ARATH3.932e-1231.25Putative pentatricopeptide repeat-containing prote... [more]
PP309_ARATH3.932e-1233.33Pentatricopeptide repeat-containing protein At4g14... [more]
PPR15_ARATH5.136e-1232.99Pentatricopeptide repeat-containing protein At1g06... [more]
PP303_ARATH5.136e-1230.71Pentatricopeptide repeat-containing protein At4g04... [more]
PP165_ARATH5.136e-1231.25Pentatricopeptide repeat-containing protein At2g20... [more]
PPR10_ARATH6.707e-1229.77Pentatricopeptide repeat-containing protein At1g04... [more]
PP353_ARATH6.707e-1238.54Pentatricopeptide repeat-containing protein At4g37... [more]
PP268_ARATH6.707e-1229.01Putative pentatricopeptide repeat-containing prote... [more]
PP235_ARATH6.707e-1227.94Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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