CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP192_ARATH (Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALY-FQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TF +LL  C    A+  G  +H       L+    IS+ L+ +Y   G + +A ++FDQ SN+   +  WNS+I+GYA+ G    AI L+   M + G +PD  T+  VL +C   GL++ G
Sbjct:  223 TFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVS--WNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEG 342          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            GI     T AS+L+ C  L  +E G ++H     +       I S L  +Y+  G +++ + VF +  N+   +  WN++ISG +  G+ ++A+ L+ +M  EG+EPD  TF  ++ AC+  G +  G
Sbjct:  418 GIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVS--WNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERG 543          

HSP 2 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 39/128 (30.47%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            GI     T   +L  C  +  +E G +LH  +      ++   ++ L+ +YA  G + +A + FD +  R      W SLISGY +  + E+A+ LY +M+  G+ P+  T   VLKAC+ L  + +G
Sbjct:  317 GIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVAL--WTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELG 442          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 37/130 (28.46%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +  +  +     S L  C    A+  G+ +H  +  N+   N  + + L+ +Y   G +D+A  +F +M  R    +  +++ISG A  GE E A+ ++ +M +EG+EPD   +  VL AC+  GL++ G
Sbjct:  227 ETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTY--SAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEG 354          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP345_ARATH (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  212 TFASLLETCYQLK--AVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TF S+L      +  +V+ G + H  +    L     +SS LL +YA  G IDE+ +VF++MS +  F   W S+IS Y+  G++E  + L+ +M +E V PD  TF  VL AC   G++  G
Sbjct:  474 TFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFV--WTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRKGMVDKG 594          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 38/135 (28.15%), Postives = 70/135 (51.85%), Query Frame = 2
Query:  170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++  V +G+        S+L  C +   +  G+++H ++  + L  N  + + LL +YA  G + +A  VF+ +  +   +  WN+++ G    G  ++AI L+ +M  EG+ PD+ TF  VL +C   GLI  G
Sbjct:  303 VDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVS--WNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEG 435          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP244_ARATH (Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 38/120 (31.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  218 ASLLETCYQLKAVEHGIKLHRL-IPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +S+L+ C  + +V  G ++H   + ++ +R +  + + L+ +YA  G I++A   F++M  +   +  W SLI+GY   G +E AI LY +ME E ++P+  TF  +L AC+  G   +G
Sbjct:  321 SSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRS--WTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELG 438          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP148_ARATH (Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 43/128 (33.59%), Postives = 63/128 (49.22%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            G+     T ASLL  C QL  +  G +LH     N       + + L+ +YA  G   +A  VF  +  +      WNS+ISGY+  G    A++ Y +M E+G++PD+ TF  VL AC   G +  G
Sbjct:  394 GLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSI--KAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEG 519          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR65_ARATH (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            GI        SLL  C Q  A+E G  +H  I  N +  +K + + L+ +YA  G I+ A +VF ++  R   +  W SLI G A  G    A+ LY++ME  GV  D  TF  VL AC   G +  G
Sbjct:  274 GIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTAS--WTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEG 399          

HSP 2 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            G+     T   +L++  +L+ V  G K+H       L  +  +S+ L+ +YA+ G I+  H+VFD+M  R   +  WN LIS Y   G +EDAI ++ +M +E  ++ D+ T    L AC+ L  + +G
Sbjct:   41 GLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVS--WNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIG 167          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 38/123 (30.89%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  206 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T T+ S++    +L    H   +H ++  + L KN  +++ L+ +YA  G I  A  +FD MS R      WN++I GY   G  + A+ L+ +M++  ++P+  TF  V+ AC+  GL+  G
Sbjct:  438 TFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT--WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  320 SSKLLRLYATFGL----IDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIAL---YFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++++LR  AT  L    +D AH++F+QM  R  F+  WN++I G++E  E +  IA+   Y  M +E VEP++FTFP VLKACA  G I+ G
Sbjct:   58 AAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFS--WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEG 147          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP192_ARATH6.707e-1234.43Pentatricopeptide repeat-containing protein At2g37... [more]
PP181_ARATH6.707e-1230.47Pentatricopeptide repeat-containing protein At2g33... [more]
PPR68_ARATH8.760e-1228.46Pentatricopeptide repeat-containing protein At1g31... [more]
PP345_ARATH8.760e-1235.77Pentatricopeptide repeat-containing protein At4g32... [more]
PP261_ARATH8.760e-1228.15Pentatricopeptide repeat-containing protein At3g29... [more]
PP244_ARATH8.760e-1231.67Pentatricopeptide repeat-containing protein At3g20... [more]
PP148_ARATH8.760e-1233.59Pentatricopeptide repeat-containing protein At2g04... [more]
PPR65_ARATH1.144e-1135.94Pentatricopeptide repeat-containing protein At1g31... [more]
PPR32_ARATH1.144e-1130.89Pentatricopeptide repeat-containing protein At1g11... [more]
PP425_ARATH1.144e-1143.48Pentatricopeptide repeat-containing protein At5g48... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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