CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +++GI     TF SLL+ C   KA+E G +LH L     L  N  +   L+ +Y     +D A  VFD++       +  N++I+GYA      +A++L+ +M+ + ++P++ T   VL +CA LG + +G
Sbjct:  121 LEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCY--NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG 249          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP111_ARATH (Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = 2
Query:  152 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN-KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +  ++     +++GI     T  S+L +C  +  +  G  +H       L  N + +S  L+ LYA  G + +   V   +S+R   A  WNSLIS YA  G    A+ L+ QM  + ++PD FT    + AC   GL+ +G
Sbjct:  285 EKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVA--WNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLG 424          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 41/146 (28.08%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  137 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +L+ALD   Q      + G+     +  S+L  C  L ++++G ++H  +       +  ++S L+ +Y   G + +A  VFD+ S++      WNS+ISGYA  G  E+A+ ++ +M   G  P++ T   +L AC+  G +  G
Sbjct:  312 ELEALDLFAQ----MQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIM--WNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEG 451          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 42/142 (29.58%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  149 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            LD  +      + +G    +  + +LL++    +A++ G ++H  +    L  N  I + ++ +Y   G +  A +VFDQM+ +   A     L+ GY + G   DA+ L+  +  EGVE D F F  VLKACA L  + +G
Sbjct:  165 LDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAC--TGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLG 304          

HSP 2 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 41/131 (31.30%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  185 QNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +N   + + T+ S+ + C  L     G ++H   I  +L+    G  S L+ +Y+  G +D+A++VF+ M N    A  W + ISG+A  G   +A+ L+ +M   G++P+  TF  VL AC+  GL+  G
Sbjct:  380 KNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYG-ESALITMYSKCGCLDDANEVFESMDNPDIVA--WTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQG 507          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 38/121 (31.40%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TFA++L +C +   +  G ++H LI       +  + S LL +YA  G I EA ++F+ +  R   +    ++I+GYA+LG  E+A+ ++ ++  EG+ P+  T+  +L A +GL L+  G
Sbjct:  155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC--TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHG 273          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  185 QNGITVQTETFASLLETCYQLKA-VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + GI     TF+S+L  C    A +  G + H     + L  +  +SS LL +YA  G I+ A +VF +   +   +  WNS+ISGYA+ G+   A+ ++ +M++  V+ D  TF  V  AC   GL+  G
Sbjct:  487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVS--WNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEG 615          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP144_ARATH (Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 37/118 (31.36%), Postives = 61/118 (51.69%), Query Frame = 2
Query:  221 SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            SLL  C  +  +++G ++H  +      ++  + + L+ +Y   GL   A ++FD+   +      WN +ISGY + GE E AI ++  + EE VEP   TF  VL AC+  G +  G
Sbjct:  373 SLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKG 490          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR47_ARATH (Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 36/127 (28.35%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  194 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +   + T   +L  C +L A+  G ++H  +    + +N  + + L+ +YA  GL+ E   VF+ + ++   +  WNS+I GY   G  E A++++ +M   G  PD      VL AC+  GL+  G
Sbjct:  430 VLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLIS--WNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKG 554          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 37/125 (29.60%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  200 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            V   T+ +L+E C +LK++    +++  + +N     + + +++L ++   G+I +A ++FD++  R  +++   S+ISG+   G Y +A  L+  M EE  + +  TF  +L+A AGLG I VG
Sbjct:  121 VGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSY--YSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVG 243          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T  S+L  C  L  +E G +L      N    N  + +  + +Y+  G+ID A ++F+++ N+      WNS+I   A  G++++A+ L+ QM  EG +PD  TF  +L AC   G++  G
Sbjct:  217 TVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLC-SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKG 336          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP145_ARATH2.549e-1131.30Pentatricopeptide repeat-containing protein At2g02... [more]
PP111_ARATH2.549e-1129.58Putative pentatricopeptide repeat-containing prote... [more]
PPR84_ARATH3.329e-1128.08Pentatricopeptide repeat-containing protein At1g56... [more]
PP378_ARATH3.329e-1129.58Pentatricopeptide repeat-containing protein At5g13... [more]
PP227_ARATH3.329e-1131.40Putative pentatricopeptide repeat-containing prote... [more]
PP172_ARATH3.329e-1132.82Pentatricopeptide repeat-containing protein At2g27... [more]
PP144_ARATH3.329e-1131.36Pentatricopeptide repeat-containing protein At2g02... [more]
PPR47_ARATH4.348e-1128.35Putative pentatricopeptide repeat-containing prote... [more]
PP427_ARATH4.348e-1129.60Pentatricopeptide repeat-containing protein At5g50... [more]
PP371_ARATH4.348e-1131.40Pentatricopeptide repeat-containing protein At5g08... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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