CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11 Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +++GI TF SLL+ C KA+E G +LH L L N + L+ +Y +D A VFD++ + N++I+GYA +A++L+ +M+ + ++P++ T VL +CA LG + +G Sbjct: 121 LEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCY--NAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG 249
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP111_ARATH (Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.549e-11 Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = 2 Query: 152 DSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN-KGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + ++ +++GI T S+L +C + + G +H L N + +S L+ LYA G + + V +S+R A WNSLIS YA G A+ L+ QM + ++PD FT + AC GL+ +G Sbjct: 285 EKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVA--WNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLG 424
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 41/146 (28.08%), Postives = 75/146 (51.37%), Query Frame = 2 Query: 137 KLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +L+ALD Q + G+ + S+L C L ++++G ++H + + ++S L+ +Y G + +A VFD+ S++ WNS+ISGYA G E+A+ ++ +M G P++ T +L AC+ G + G Sbjct: 312 ELEALDLFAQ----MQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIM--WNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEG 451
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 42/142 (29.58%), Postives = 71/142 (50.00%), Query Frame = 2 Query: 149 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 LD + + +G + + +LL++ +A++ G ++H + L N I + ++ +Y G + A +VFDQM+ + A L+ GY + G DA+ L+ + EGVE D F F VLKACA L + +G Sbjct: 165 LDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAC--TGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLG 304 HSP 2 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 41/131 (31.30%), Postives = 70/131 (53.44%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +N + + T+ S+ + C L G ++H I +L+ G S L+ +Y+ G +D+A++VF+ M N A W + ISG+A G +A+ L+ +M G++P+ TF VL AC+ GL+ G Sbjct: 380 KNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYG-ESALITMYSKCGCLDDANEVFESMDNPDIVA--WTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQG 507
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 38/121 (31.40%), Postives = 69/121 (57.02%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TFA++L +C + + G ++H LI + + S LL +YA G I EA ++F+ + R + ++I+GYA+LG E+A+ ++ ++ EG+ P+ T+ +L A +GL L+ G Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC--TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHG 273
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKA-VEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + GI TF+S+L C A + G + H + L + +SS LL +YA G I+ A +VF + + + WNS+ISGYA+ G+ A+ ++ +M++ V+ D TF V AC GL+ G Sbjct: 487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVS--WNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEG 615
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP144_ARATH (Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11 Identity = 37/118 (31.36%), Postives = 61/118 (51.69%), Query Frame = 2 Query: 221 SLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 SLL C + +++G ++H + ++ + + L+ +Y GL A ++FD+ + WN +ISGY + GE E AI ++ + EE VEP TF VL AC+ G + G Sbjct: 373 SLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKG 490
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR47_ARATH (Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 36/127 (28.35%), Postives = 64/127 (50.39%), Query Frame = 2 Query: 194 ITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + + T +L C +L A+ G ++H + + +N + + L+ +YA GL+ E VF+ + ++ + WNS+I GY G E A++++ +M G PD VL AC+ GL+ G Sbjct: 430 VLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLIS--WNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKG 554
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 37/125 (29.60%), Postives = 72/125 (57.60%), Query Frame = 2 Query: 200 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 V T+ +L+E C +LK++ +++ + +N + + +++L ++ G+I +A ++FD++ R +++ S+ISG+ G Y +A L+ M EE + + TF +L+A AGLG I VG Sbjct: 121 VGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSY--YSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVG 243
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP371_ARATH (Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11 Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T S+L C L +E G +L N N + + + +Y+ G+ID A ++F+++ N+ WNS+I A G++++A+ L+ QM EG +PD TF +L AC G++ G Sbjct: 217 TVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLC-SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKG 336 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |