CX296277

Overview
NameCX296277
Unique NameCX296277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3375 contig Ccv1_Contig3375:202..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 3
Query:  273 SLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 473
            S A++     P   +   A  +E + K++R   YRG+RQRPWGKWAAEIRDP +  RVWLGTF+TAE
Sbjct:   47 SFARVDSSHNPIEESMSKAFPEEAREKKRR---YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAE 110          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.932e-13
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  213 AATKQLPHNFESTPFSDEHQSLAKIKR-PQPPSYLNSCSASGDEKKPKRQ-----RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 473
            +A  Q+  N  S+  +++HQ +   ++ P PP+             P  Q     RK  YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAE
Sbjct:   46 SALTQVIGNQSSSHDNNQHQPVVYNQQDPNPPA-------------PPTQDQGLLRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAE 125          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  153 FPRHGGSRV----TASDLWPNSPFAATKQLPHNFEST---------PFSDEHQSLAKIKRPQPPSYLNSCS-ASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            FP H  +      + S  +P+S F +  Q P N++S             D +  +     P  P ++     +SG   KP +    LYRG+RQR WGKW AEIR PR   R+WLGTF+TAEE
Sbjct:   61 FPSHSTTSYPDIYSGSMTYPSS-FGSDLQQPENYQSQFHYQNTITYTHQDNNTCMLNFIEPSQPGFMTQPGPSSGSVSKPAK----LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEE 177          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 3
Query:  360 RKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 473
            R+  YRG+RQRPWGKWAAEIRDP+K  RVWLGTF TAE
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAE 123          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 3
Query:  258 SDEHQSLAKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            SDE QS A  +  Q P+  N  S SG  KK        +RG+RQRPWGKWAAEIRDP +  R+WLGTF TAEE
Sbjct:   99 SDETQSPASSR--QRPN--NKVSVSGQIKK--------FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEE 159          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.548e-12
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  207 PFAATKQLPHNF--ESTPFSDEHQSL---AKIKRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEE 476
            P   T QL HNF  E+ P +  +QS    + + + +PP    S S +   K  K + +  YRG+R+RPWGK+AAEIRDP +KG R+WLGT++TA E
Sbjct:   29 PSLFTNQL-HNFHSETGPRTITNQSPKPNSTLNQRKPPLPNLSVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVE 123          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 3
Query:  372 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            +RG+RQRPWGKWAAEIRDP K VR+WLGT+NTAEE
Sbjct:  122 FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEE 156          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.328e-12
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  324 SASGDEKKP--KRQRKNL-------------YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            S   D++KP  K+++K +             +RG+RQRPWGKWAAEIRDP + VRVWLGTF+TAEE
Sbjct:   56 SVVSDKEKPMKKKRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEE 121          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:  324 SASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 473
            S SGD+  P+R+    YRG+RQRPWGKWAAEIRDP K  RVWLGTF+ AE
Sbjct:  175 SFSGDQ--PRRR----YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAE 218          
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 35/63 (55.56%), Postives = 40/63 (63.49%), Query Frame = 3
Query:  288 KRPQPPSYLNSCSASGDEKKPKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 476
            KR    S +   S SG  +K        YRG+RQRPWGKWAAEIRDP +  R+WLGTF TAEE
Sbjct:   96 KRINVDSTVQKPSVSGQNQKK-------YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEE 151          
The following BLAST results are available for this feature:
BLAST of CX296277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
EF110_ARATH2.305e-1352.24Ethylene-responsive transcription factor ERF110 OS... [more]
EF115_ARATH3.932e-1345.16Ethylene-responsive transcription factor ERF115 OS... [more]
ERF55_ARATH8.759e-1336.89Ethylene-responsive transcription factor ERF055 OS... [more]
EF114_ARATH8.759e-1378.95Ethylene-responsive transcription factor ERF114 OS... [more]
CRF3_ARATH8.759e-1356.16Ethylene-responsive transcription factor CRF3 OS=A... [more]
EF104_ARATH2.548e-1244.79Ethylene-responsive transcription factor ERF104 OS... [more]
CRF2_ARATH3.328e-1282.86Ethylene-responsive transcription factor CRF2 OS=A... [more]
CRF1_ARATH3.328e-1253.03Ethylene-responsive transcription factor CRF1 OS=A... [more]
ABR1_ARATH4.347e-1268.00Ethylene-responsive transcription factor ABR1 OS=A... [more]
CRF4_ARATH7.415e-1255.56Ethylene-responsive transcription factor CRF4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05138C05SK FerrChloL1 Citrus clementina cDNA clone C05138C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296277 ID=CX296277; Name=CX296277; organism=Citrus clementina; type=EST; length=478bp
ACGAGGGTAAACCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTATAATC
GCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTTATT
ATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAGACT
TCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGGCCC
AACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATCTAC
TCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTCAAC
CCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAGCCC
AAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTGGGG
CAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCTGGC
TCGGCACATTCAACACTGCCGAAGAAGC
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