CX296277

Overview
NameCX296277
Unique NameCX296277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3375 contig Ccv1_Contig3375:202..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296277 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 3 
Query:  363 KNLYRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNTAEE 476
            K  YRG+RQRPWGK+AAEIRDP RKG RVWLGTF+TA E
Sbjct:  135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIE 173
The following BLAST results are available for this feature:
BLAST of CX296277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERF5_NICSY8.198e-1179.49Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC05138C05SK FerrChloL1 Citrus clementina cDNA clone C05138C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296277 ID=CX296277; Name=CX296277; organism=Citrus clementina; type=EST; length=478bp
ACGAGGGTAAACCCTTTGAGTTCTCTCGCATCTTCTTTTCTCTTATAATC
GCCAAAACCACAGCCTGACCTGATCGCTAGTTTAGTTTCAGTGCTTTATT
ATTACATTTACTTGCGGAAAGAATGTGTGGCGGTTCTATCTTAGGAGACT
TCTTTCCTCGCCACGGCGGCAGCCGCGTCACCGCTTCCGACCTCTGGCCC
AACTCACCCTTCGCTGCTACTAAACAACTCCCTCACAACTTTGAATCTAC
TCCGTTCTCCGATGAACACCAGTCACTGGCCAAAATCAAACGCCCTCAAC
CCCCTTCATATCTAAACTCCTGTTCAGCTTCAGGTGATGAGAAAAAGCCC
AAGAGGCAGAGGAAGAATCTCTACAGGGGAATAAGGCAACGCCCCTGGGG
CAAATGGGCAGCTGAGATTCGTGACCCAAGGAAAGGAGTTCGAGTCTGGC
TCGGCACATTCAACACTGCCGAAGAAGC
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