CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALCH (D-cysteine desulfhydrase OS=Salmonella choleraesuis GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_SALA4 (D-cysteine desulfhydrase OS=Salmonella agona (strain SL483) GN=dcyD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            HLT  P     L   PTP+    LP L      E+++KRDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:    5 HLTRFPR--LELIGAPTPLEY--LPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_METNO (1-aminocyclopropane-1-carboxylate deaminase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=acdS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 43/115 (37.39%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  288 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI +      +L    E++ KR+D  SG+   GNK+RKLE+++ DA+A GAD +++IGG+QSNH R  A  A  + + C L+        D      GN+++ R++GA + L+
Sbjct:   14 PTPIERLGRLSAHLGGQVELYAKREDCNSGLAFGGNKLRKLEYIVPDAIASGADTLVSIGGVQSNHTRMVAAVAAKIGMKCRLVQEAWVPHEDAVYDRVGNIMLSRILGADVRLV 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCJ (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=acdS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L++
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVA 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCH (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cenocepacia (strain HI2424) GN=acdS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P +  + G  PTPI   K    +L    +++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+S
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVDLYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVS 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURCA (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia cenocepacia (strain AU 1054) GN=acdS PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P +  + G  PTPI   K    +L    +++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+S
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVDLYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVS 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_RHIRD (1-aminocyclopropane-1-carboxylate deaminase OS=Rhizobium radiobacter GN=acdS PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  330 NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            + E+W KR+D  SG+ + GNK+RKLE+++ DA+A  AD +++IGG+QSNH R  A  A  L + C L+  +     D      GN+L+ RL+GA   ++
Sbjct:   30 DVEIWAKREDCNSGLAMGGNKLRKLEYIVPDAIASNADTLVSIGGVQSNHTRMVAAVAAKLGMKCRLVQESWVPHEDAVYDRVGNILMTRLMGADSRIV 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_RHILV (1-aminocyclopropane-1-carboxylate deaminase OS=Rhizobium leguminosarum bv. viciae GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  288 PTPIHKWNLPNLPH----NTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI   +LP L        +++ KRDD  SG+ + GNK+RKLE+++ DA+A GAD +++IGG+QSNH R  A  A  + + C +I        D      GN+L+ +L+GA   L+
Sbjct:   16 PTPIE--HLPRLTAALGGKVDIYAKRDDCNSGLAMGGNKLRKLEYIVPDAIASGADTLVSIGGVQSNHTRMVAATAAKIGMKCVVIQEKWVPHYDAVYDRVGNILMTKLMGADSRLV 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_PYRFU (Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus furiosus GN=PF0010 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  291 TPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVG 605
            TPI    LPN+      ++++KRDDL+G+ + GNK+RKLE+L+ DA+ + AD IIT+G + SNH     +AAK L  D  L+LR  +        L GN L+++++G
Sbjct:   22 TPIQY--LPNISKLVGADIYVKRDDLTGLGIGGNKIRKLEYLLGDAIIRKADVIITVGAVHSNHAFVTGLAAKKLGFDVVLVLRGKE-------ELRGNYLLDKIMG 119          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURVG (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+AQGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L++
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPDALAQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYDDPVYDRVGNIQLSRMMGADVRLVA 130          
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
DCYD_SALCH1.463e-1540.63D-cysteine desulfhydrase OS=Salmonella choleraesui... [more]
DCYD_SALA41.463e-1540.63D-cysteine desulfhydrase OS=Salmonella agona (stra... [more]
1A1D_METNO1.463e-1537.391-aminocyclopropane-1-carboxylate deaminase OS=Met... [more]
1A1D_BURCJ1.463e-1537.401-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURCH1.463e-1537.401-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURCA1.463e-1537.401-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_RHIRD1.910e-1540.401-aminocyclopropane-1-carboxylate deaminase OS=Rhi... [more]
1A1D_RHILV1.910e-1539.321-aminocyclopropane-1-carboxylate deaminase OS=Rhi... [more]
1A1D_PYRFU1.910e-1541.12Putative 1-aminocyclopropane-1-carboxylate deamina... [more]
1A1D_BURVG1.910e-1537.401-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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