CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURPS (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia pseudomallei GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:  288 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV 129
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURP6 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia pseudomallei (strain 668) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:  288 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV 129
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURP0 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia pseudomallei (strain 1106a) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:  288 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV 129
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURMS (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia mallei (strain SAVP1) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:  288 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV 129
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURMA (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia mallei GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:  288 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV 129
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURM9 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia mallei (strain NCTC 10229) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:  288 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV 129
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURM7 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia mallei (strain NCTC 10247) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 3 
Query:  288 PTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI   K    +L    E++ KRDD  SG+   GNK RKLE+L+ DA+AQG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L+
Sbjct:   15 PTPIQPLKRLSAHLGGKVELYAKRDDCNSGLAFGGNKTRKLEYLIPDALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYHDAVYDRVGNIQMSRMMGADVRLV 129
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_AGRVS (1-aminocyclopropane-1-carboxylate deaminase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 3 
Query:  288 PTPIHKWN--LPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI K      +L    +++ KR+D  SG+   GNK+RKLE+++ DA+A GAD +++IGG+QSNH R  A  A  +   C L+        D      GN+++ R++GA + L+
Sbjct:   14 PTPIEKLERLTDHLGGKVQLYAKREDCNSGLAFGGNKLRKLEYIIPDAIASGADTLVSIGGVQSNHTRMVAAVAAKIGFKCRLVQEAWVPHEDAVYDRVGNIMLSRIMGADVRLV 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_METS4 (1-aminocyclopropane-1-carboxylate deaminase OS=Methylobacterium sp. (strain 4-46) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 42/115 (36.52%), Postives = 69/115 (60.00%), Query Frame = 3 
Query:  288 PTPIHKWNL--PNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELI 623
            PTPI + +    +L    +++ KR+D  SG+   GNK+RKLE+++ DA+A GAD +++IGG+QSNH R  A  A  + + C L+        D      GN+++ R++GA + L+
Sbjct:   14 PTPIERLSRLSAHLGGKVDLYAKREDCNSGLAFGGNKLRKLEYIVPDAIASGADTLVSIGGVQSNHTRMVAAVAAKIGMKCRLVQEAWVPHEDAVYDRVGNIMLSRIMGADVRLV 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_BURS3 (1-aminocyclopropane-1-carboxylate deaminase OS=Burkholderia sp. (strain 383) GN=acdS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 3 
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ DA+ QGAD +++IGG+QSN  R  A  A +L + C L+        D      GN+ + R++GA + L+S
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSEHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALEQGADTLVSIGGVQSNQTRQVAAVAAHLGMKCVLVQEHWVNYEDPVYDRVGNIQLSRMMGADVRLVS 130
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
1A1D_BURPS1.910e-1540.871-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURP61.910e-1540.871-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURP01.910e-1540.871-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURMS1.910e-1540.871-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURMA1.910e-1540.871-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURM91.910e-1540.871-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_BURM71.910e-1540.871-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]
1A1D_AGRVS1.910e-1537.391-aminocyclopropane-1-carboxylate deaminase OS=Agr... [more]
1A1D_METS42.495e-1536.521-aminocyclopropane-1-carboxylate deaminase OS=Met... [more]
1A1D_BURS32.495e-1537.401-aminocyclopropane-1-carboxylate deaminase OS=Bur... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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