CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECOSM (D-cysteine desulfhydrase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECOLU (D-cysteine desulfhydrase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECOLI (D-cysteine desulfhydrase OS=Escherichia coli (strain K12) GN=dcyD PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECOLC (D-cysteine desulfhydrase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECOL6 (D-cysteine desulfhydrase OS=Escherichia coli O6 GN=dcyD PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECOHS (D-cysteine desulfhydrase OS=Escherichia coli O9:H4 (strain HS) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECODH (D-cysteine desulfhydrase OS=Escherichia coli (strain K12 / DH10B) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECOBW (D-cysteine desulfhydrase OS=Escherichia coli (strain K12 / BW2952) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECO8A (D-cysteine desulfhydrase OS=Escherichia coli O8 (strain IAI1) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
[Close]
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: DCYD_ECO81 (D-cysteine desulfhydrase OS=Escherichia coli O81 (strain ED1a) GN=dcyD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  288 PTPIHKWNLPNLPH--NTEVWLKRDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            PTP+    LP        E+++KRDD++ M + GNK+RKLEFL ADA+ +GAD +IT G IQSNH R  A  A  L L C  +L        ++    GN L+  L    IE+
Sbjct:   18 PTPLEY--LPRFSDYLGREIFIKRDDVTPMAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 128
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
DCYD_ECOSM9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli (stra... [more]
DCYD_ECOLU9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O17:K... [more]
DCYD_ECOLI9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli (stra... [more]
DCYD_ECOLC9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli (stra... [more]
DCYD_ECOL69.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O6 GN... [more]
DCYD_ECOHS9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O9:H4... [more]
DCYD_ECODH9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli (stra... [more]
DCYD_ECOBW9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli (stra... [more]
DCYD_ECO8A9.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O8 (s... [more]
DCYD_ECO819.481e-1541.59D-cysteine desulfhydrase OS=Escherichia coli O81 (... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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