CX296280

Overview
NameCX296280
Unique NameCX296280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296280_ssr125 microsatellite CX296280_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2329 contig Ccv1_Contig2329:27..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_PSEPU (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas putida GN=acdS PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+ QG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L
Sbjct:   19 TPLKRLS-EHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIEQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRL 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_ENTCL (1-aminocyclopropane-1-carboxylate deaminase OS=Enterobacter cloacae GN=acdS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+ QG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L
Sbjct:   19 TPLKRLS-QHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEAIEQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRL 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_RALPJ (1-aminocyclopropane-1-carboxylate deaminase OS=Ralstonia pickettii (strain 12J) GN=acdS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFPTPIH--KWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L   P +  + G  PTPI   K    +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L L C L+        D      GN+ + R++GA + L S
Sbjct:    2 NLQRFPRYPLTFG--PTPIQPLKRLSAHLGGKVELFAKREDCNSGLAFGGNKTRKLEYLIPEALEGGYDTLVSIGGIQSNQTRQVAAVAAHLGLKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRLDS 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_PSEFL (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas fluorescens GN=acdS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  291 TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIEL 620
            TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+ QG D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L
Sbjct:   19 TPLKRLS-EHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLIPEALEQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIEMSRIMGADVRL 128          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_PSEU2 (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=acdS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFP-TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L+    +  + G  P TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L S
Sbjct:    2 NLSKFKRYPLTFGPSPITPLKRLS-EHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPEAIDGGYDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDALYDRVGNIEMSRIMGADVRLDS 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_PSE14 (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=acdS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFP-TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L+    +  + G  P TP+ + +  +L    E++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L S
Sbjct:    2 NLSKFKRYPLTFGPSPITPLKRLS-EHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPEAIDGGYDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDALYDRVGNIEMSRIMGADVRLDS 130          
BLAST of CX296280 vs. ExPASy Swiss-Prot
Match: 1A1D_PSESM (1-aminocyclopropane-1-carboxylate deaminase OS=Pseudomonas syringae pv. tomato GN=acdS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  243 HLTPIPSHVFSLGHFP-TPIHKWNLPNLPHNTEVWLKRDDL-SGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLTGNLLVERLVGAHIELIS 626
            +L+    +  + G  P TP+ + +  +L    +++ KR+D  SG+   GNK RKLE+L+ +A+  G D +++IGGIQSN  R  A  A +L + C L+        D      GN+ + R++GA + L S
Sbjct:    2 NLSKFKRYPLTFGPSPITPLKRLS-EHLGGKVDLYAKREDCNSGLAFGGNKTRKLEYLVPEAIEGGYDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDALYDRVGNIEMSRIMGADVRLDS 130          
The following BLAST results are available for this feature:
BLAST of CX296280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
1A1D_PSEPU3.050e-1336.941-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_ENTCL3.050e-1336.941-aminocyclopropane-1-carboxylate deaminase OS=Ent... [more]
1A1D_RALPJ5.202e-1336.641-aminocyclopropane-1-carboxylate deaminase OS=Ral... [more]
1A1D_PSEFL5.202e-1336.941-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_PSEU23.372e-1233.851-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_PSE143.372e-1233.851-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]
1A1D_PSESM5.752e-1233.081-aminocyclopropane-1-carboxylate deaminase OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionC05138C08SK FerrChloL1 Citrus clementina cDNA clone C05138C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296280 ID=CX296280; Name=CX296280; organism=Citrus clementina; type=EST; length=696bp
AGAGGCCTCGTGCCGAATTCCTCGTGCCGAATTCGGCACGAGGCAGCTGC
AGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCT
AATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCA
AAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAA
TTCCTCACCAAAACCCCATACGCTTCTCCTTCTTGGGCTTCTCATCTCAC
CCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTC
ACAAATGGAACCTCCCTAATTTGCCCCATAACACTGAGGTCTGGCTCAAG
CGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAGGAAATT
AGAGTTTTTGATGGCAGATGCAGTGGCTCAAGGTGCTGATTGCATCATCA
CCATTGGAGGCATCCAAAGCAATCATTGTCGTGCTGCTGCCGTTGCTGCC
AAGTATCTCAATCTTGATTGTTATCTTATTCTTCGCACCTCTAAGGTTCT
GGTGGACCAAGATCCTGGTTTGACTGGCAATCTACTAGTTGAACGTTTAG
TTGGAGCTCATATTGAACTTATCTCTAAAGAAGAGTATTCAAAAATTGGG
AGTGTGACTCTTACTAACATTTTAAAGAAAAGTTGCTAAAGGAAGG
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