CX296318

Overview
NameCX296318
Unique NameCX296318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:362..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 438.728 bits (1127), Expect = 1.290e-122
Identity = 211/222 (95.05%), Postives = 218/222 (98.20%), Query Frame = 2
Query:    8 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            SFKYAWVLDKLKAERERGITIDIALWKFETTKY CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK MICCCNKMDATTPKYSK+RYDEIVKEVSSYLKKVGYNP+KVPFVPISGFEGDNMIERS+NLDWYKGPTLL+ALD INEPKRPS+KPLRLPLQDVYKIGGIGTVPV RVETGV+KPGMVVTFGP+GLT
Sbjct:   53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKHMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKVPFVPISGFEGDNMIERSSNLDWYKGPTLLEALDQINEPKRPSEKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLT 274          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 1.685e-122
Identity = 209/222 (94.14%), Postives = 219/222 (98.65%), Query Frame = 2
Query:    8 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+R++EIVKEVSSYLKKVGYNP+K+ F+PISGFEGDNMI+RSTNLDWYKGPTLL+ALD I+EPKRPSDKPLRLPLQDVYKIGGIGTVPV RVETGV+KPGMVVTFGPSGLT
Sbjct:   53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFEEIVKEVSSYLKKVGYNPDKIAFIPISGFEGDNMIDRSTNLDWYKGPTLLEALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPSGLT 274          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 435.647 bits (1119), Expect = 1.092e-121
Identity = 210/222 (94.59%), Postives = 217/222 (97.75%), Query Frame = 2
Query:    8 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            SFKYAWVLDKLKAERERGITIDIALWKFETTKY CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG F+AGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK+RYDEIVKEVSSYLKKVGYNP+KVPFVPISGFEGDNMIERS+NLDWYKGPTLL+ALD INEPKRPSDKPL LPLQDVYKIGGIGTVPV RVETGV+KPGMVVTFGP+GLT
Sbjct:   53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYSCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGVFQAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKVPFVPISGFEGDNMIERSSNLDWYKGPTLLEALDQINEPKRPSDKPLHLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLT 274          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 432.18 bits (1110), Expect = 1.208e-120
Identity = 208/222 (93.69%), Postives = 217/222 (97.75%), Query Frame = 2
Query:    8 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            SFKYAW+LDKLKAERERGITIDIAL KFETTKYY TV+DAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK RY+EIVKEVSSYLK+VGYNP+K+PFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPV RVETGV+KPGM+VTF P+GLT
Sbjct:   53 SFKYAWLLDKLKAERERGITIDIALLKFETTKYYSTVMDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKEVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMLVTFAPTGLT 274          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 377.481 bits (968), Expect = 3.530e-104
Identity = 180/222 (81.08%), Postives = 202/222 (90.99%), Query Frame = 2
Query:    8 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            SFKYAWV+DKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVL+I S TG FEAGI+K+GQTREHALLA+TLGVKQMI   NKMD  +  YS+ARYDEIVKEVSS++KK+GYNPEKV FVPISG+ GDNM+ERS  ++WYKGPTLL+ALD I EPKRP DKPLR+PLQDVYKIGGIGTVPV RVETG++KPGMVVTF P+GL+
Sbjct:   53 SFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEVSSFIKKIGYNPEKVAFVPISGWNGDNMLERSDKMEWYKGPTLLEALDAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLS 274          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 2.288e-103
Identity = 185/224 (82.59%), Postives = 197/224 (87.95%), Query Frame = 2
Query:    2 RGSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            +GSFKYAWVLDKLKAERER ITIDIALWKFET K   T+IDAPGHRDFIKNMITGTSQAD AVL+IDSTTGGFEAGISKDGQTREHALLA+TLGVKQMI   NK D  T KYS+ARY+EI KEVS YLKKVGYNPEKVPF+PISG+ GDNMIE S N+ WYKG TL+ ALDN+  PKRPSDKPLRLPLQDVYKIGGIGTVPV RVETGVLKPG VVTF P+ LT
Sbjct:   51 KGSFKYAWVLDKLKAERERCITIDIALWKFETAKSVFTIIDAPGHRDFIKNMITGTSQADAAVLVIDSTTGGFEAGISKDGQTREHALLAYTLGVKQMIVATNKFDDKTVKYSQARYEEIKKEVSGYLKKVGYNPEKVPFIPISGWNGDNMIEASENMGWYKGLTLIGALDNLEPPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGDVVTFAPNNLT 274          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 362.844 bits (930), Expect = 8.997e-100
Identity = 177/224 (79.02%), Postives = 194/224 (86.61%), Query Frame = 2
Query:    2 RGSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            + SFKYAWVLDKLKAERERGITIDIALWKFE+ K   T+IDAPGHRDFIKNMITGTSQAD A+LII S  G FEAGISKDGQTREHALLAFTLGVKQM+ CCNKMD  T  Y + RYDEIVKEVS+Y+KKVGYN EKV FVPISG++GDNMIE+S  + WYKGPTLL+ALD +  P RPSDKPLRLPLQDVYKIGGIGTVPV RVETGV+KPG VVTF P+ +T
Sbjct:   51 KASFKYAWVLDKLKAERERGITIDIALWKFESPKSVFTIIDAPGHRDFIKNMITGTSQADAAILIIASAQGEFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVNYGQERYDEIVKEVSAYIKKVGYNVEKVRFVPISGWQGDNMIEKSEKMPWYKGPTLLEALDMLEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVMKPGDVVTFAPANVT 274          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 7.616e-99
Identity = 178/236 (75.42%), Postives = 200/236 (84.75%), Query Frame = 2
Query:    2 RGSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            +GSFKYAWVLDKLKAERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T  K+S+AR++EI+KE S+++KKVGYNP+ V FVPISGF GDNM+E STN  WYK            G TLL+A+D+I  PKRP+DKPLRLPLQDVYKIGGIGTVPV R+ETG+LKPGMVVTF PS +T
Sbjct:   52 KGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT--KWSEARFNEIIKETSNFIKKVGYNPKTVAFVPISGFNGDNMLEASTNCPWYKGWEKEVKGGKATGKTLLEAIDSIEPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGILKPGMVVTFAPSNVT 285          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 7.616e-99
Identity = 178/236 (75.42%), Postives = 200/236 (84.75%), Query Frame = 2
Query:    2 RGSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            +GSFKYAWVLDKLKAERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T  K+S+AR++EI+KE S+++KKVGYNP+ V FVPISGF GDNM+E STN  WYK            G TLL+A+D+I  PKRP+DKPLRLPLQDVYKIGGIGTVPV R+ETG+LKPGMVVTF PS +T
Sbjct:   52 KGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT--KWSEARFNEIIKETSNFIKKVGYNPKTVAFVPISGFNGDNMLEASTNCPWYKGWEKEVKGGKATGKTLLEAIDSIEPPKRPTDKPLRLPLQDVYKIGGIGTVPVGRIETGILKPGMVVTFAPSNVT 285          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.697e-98
Identity = 177/236 (75.00%), Postives = 198/236 (83.90%), Query Frame = 2
Query:    2 RGSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYK------------GPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVVTFGPSGLT 673
            +GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS+AR++EI KEVS+Y+KK+GYNP  V FVPISG+ GDNM+E S+N+ W+K            G TLLDALD I  P RP+DKPLRLPLQDVYKIGGIGTVPV RVETGVLKPGMVVTF P+ +T
Sbjct:   51 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSQARFEEITKEVSAYIKKIGYNPASVAFVPISGWHGDNMLEASSNMGWFKGWKIERKEGNASGTTLLDALDAILPPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPANVT 286          
The following BLAST results are available for this feature:
BLAST of CX296318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A2_HORVU1.290e-12295.05Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A2_DAUCA1.685e-12294.14Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A1_HORVU1.092e-12194.59Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_PEA1.208e-12093.69Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_DICDI3.530e-10481.08Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_EUGGR2.288e-10382.59Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_TRYBB8.997e-10079.02Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_PODCU7.616e-9975.42Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_PODAN7.616e-9975.42Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_DANRE1.697e-9875.00Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]

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Properties
Property NameValue
Genbank descriptionC05138G05SK FerrChloL1 Citrus clementina cDNA clone C05138G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296318 ID=CX296318; Name=CX296318; organism=Citrus clementina; type=EST; length=674bp
ACGAGGGTCATTCAAGTACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACC
AAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTG
ACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGACGCTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCC
CTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGT
CCCAGTGAGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGA
CATTTGGCCCCTCTGGATTGACAC
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