CX296333

Overview
NameCX296333
Unique NameCX296333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.594e-21
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = -2
Query:  402 KRVVRVPAVSLRLSDI------PPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL--SVADTRN 653
            KRVV VP   +  S        P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER+  DPS L++TY  +HNH    S A+T++
Sbjct:   47 KRVVSVPIADVEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPFPSSSANTKS 138          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = -2
Query:  429 KRVVRVPAVSLRLSD-----IPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 653
            K+VV +PA +   S      +P D ++WRKYGQKPIKGSP PRGYY+CSS +GC ARK VER+  DP+MLV+TY  EHNH
Sbjct:  195 KKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNH 274          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.324e-19
Identity = 51/100 (51.00%), Postives = 63/100 (63.00%), Query Frame = -2
Query:  354 KRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS*TRNKKTSRE 653
            K+V  V A +L       D ++WRKYGQKPIKGSP+PRGYY+CS+ +GC ARK VER   DP M +VTY  EHNH    A T    L  S TR K + ++
Sbjct:  116 KKVCHVAAEALN-----SDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHP---APTHRNSLAGS-TRQKPSDQQ 206          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK50_ARATH (Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = -2
Query:  426 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHS 611
            ++  D F WRKYG+K +K SPHPR YYKCS V GCP +K VER  DDPS ++ TYEG HNHS
Sbjct:  110 EVLDDGFKWRKYGKKMVKNSPHPRNYYKCS-VDGCPVKKRVERDRDDPSFVITTYEGSHNHS 170          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.675e-18
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = -2
Query:  414 RVVRVPAVSLRLS---DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 650
            + VR P + ++ +   DI  D + WRKYGQK +KG+P+PR YYKC+++ GCP RKHVERA  D   ++ TYEG+HNH +  A
Sbjct:  343 KTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTI-GCPVRKHVERASHDMRAVITTYEGKHNHDVPAA 423          

HSP 2 Score: 69.3218 bits (168), Expect = 1.953e-11
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = -2
Query:  342 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS*TRNKKTSREKLDH 599
            D ++WRKYGQK +KGS +PR YYKC +   CP +K VER+L+   +  + Y+G HNH    +  R+    SS T +       LDH
Sbjct:  185 DGYNWRKYGQKQVKGSENPRSYYKC-TFPNCPTKKKVERSLEG-QITEIVYKGSHNHPKPQSTRRS--SSSSSTFHSAVYNASLDH 266          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  387 RVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVAD--TRNLILES 641
            R+   +  L DI  D + WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER+  D  +L+ TYEG+H+H +      T N +L+S
Sbjct:  294 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGRVVTHNNMLDS 379          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = -2
Query:  369 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS*TRNK 611
            ++  D ++WRKYGQKPIKGSP+PR YY+CSS +GC ARK VER+  DP++ +VTY GEH H       RN +  S  TRNK
Sbjct:  162 NLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRPT--HRNSLAGS--TRNK 238          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  414 RVVRVPAVSLRLS---DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 650
            R V  P + ++ +   D+  D + WRKYGQK +KG+P+PR YYKC++  GC  RKHVERA  DP  +V TYEG+HNH L  A
Sbjct:  390 RTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPAA 470          

HSP 2 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = -2
Query:  429 DIPPDD-FSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 611
            D P DD ++WRKYGQK +KGS  PR YYKC++  GCP +K VER+LD   +  + Y+G+HNH
Sbjct:  225 DKPADDGYNWRKYGQKQVKGSEFPRSYYKCTN-PGCPVKKKVERSLDG-QVTEIIYKGQHNH 284          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = -2
Query:  423 RVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 650
            R  RV   +L   DI  D + WRKYGQK ++G+P+PR YYKC++  GCP RKHVERA  DP  ++ TYEG+H+H +
Sbjct:  365 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTA-HGCPVRKHVERASHDPKAVITTYEGKHDHDV 439          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK29_ARATH (Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.069e-17
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = -2
Query:  354 KRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLS------VADTRNLILESS*TRNKKTSRE 653
            KRVV      ++  ++  D ++WRKYGQKPIKGSP+PR YY+CSS +GC ARK VER   +P    +TY  EHNH L          TR    +   T  KK+ +E
Sbjct:  121 KRVVE----QVKEENLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNPEKFTITYTNEHNHELPTRRNSLAGSTRAKTSQPKPTLTKKSEKE 222          
The following BLAST results are available for this feature:
BLAST of CX296333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK69_ARATH1.594e-2155.43Probable WRKY transcription factor 69 OS=Arabidops... [more]
WRK14_ARATH2.082e-2160.00Probable WRKY transcription factor 14 OS=Arabidops... [more]
WRK22_ARATH3.324e-1951.00WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRK50_ARATH3.675e-1862.90Probable WRKY transcription factor 50 OS=Arabidops... [more]
WRK33_ARATH3.675e-1850.00Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRKY1_ARATH6.268e-1849.43WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRK27_ARATH6.268e-1855.56Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRKY4_ARATH8.186e-1851.22Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK20_ARATH8.186e-1852.63Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK29_ARATH1.069e-1744.34Probable WRKY transcription factor 29 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05139A05SK FerrChloL1 Citrus clementina cDNA clone C05139A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296333 ID=CX296333; Name=CX296333; organism=Citrus clementina; type=EST; length=654bp
GGTTAAGCTAAGTAATGAGGTGCTGCGCTTTTATTCAATCCTGGGAAACA
TAAGAACAAATCCAACATCTTCCCTAGCTTTTAGTTTCTAATTAACATTG
GAACACACAGTGCTTGGGTATAGAGACAGGTAGAGCTATACCAAGAGGAA
TCCCATATTATACAGACAGGGGAATGAACAAAATGAACCCAGAAATCTCC
TTCGAGACAGACAATTCCAAGCTGGGCTTCTGCTGAATTCTTAACTTTAA
AGCAAAAGCTAGCCAGCCAGACAGTTCCCTAGTTCTGTTAAATATAATAT
ATAATATTGCCACCACCGCTATGTAATTCCCCCCCTAACCAATGATCTAA
TTTCTCACGACTGGTTTTTTTGTTGCGTGTCTAAGAAGATTCCAGGATGA
GATTTCTAGTATCTGCAACAGAGAGTGAGTGATTGTGCTCGCCTTCGTAG
GTGACTACAAGCATCGATGGATCATCCAACGCTCTCTCCACGTGCTTGCG
TGCAGGGCAGCCTCTCACACTGCTGCACTTGTAGTAACCCCTCGGATGAG
GAGATCCTTTGATGGGTTTCTGTCCATACTTCCTCCACGAGAAATCATCA
GGTGGAATATCAGACAACCTTAAGCTTACAGCCGGAACCCTAACAACTCT
CTTC
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