CX296333

Overview
NameCX296333
Unique NameCX296333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = -2
Query:  360 KRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS*TRNKKTS 653
            KRVV V     R SD+    + WRKYGQKPIK SP+PR YY+C+S +GC ARK VER+  DP++ V+TY  EHNH       RN +  S+ + + K S
Sbjct: 1167 KRVVCVVDRGSRSSDL----WVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHPFPT--LRNTLAGSTRSSSSKCS 1258          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -2
Query:  363 RVVRVPAVSLRLS---DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS*TRNKKT 650
            R V  P + ++ +   D+  D + WRKYGQK +KG+P+PR YYKC++   C  RKHVERA  DP  +V TYEG+HNH +  A T +  L  +   N  T
Sbjct:  396 RTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAARTSSHQLRPNNQHNTST 493          

HSP 2 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = -2
Query:  423 SDIPPDD-FSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 614
            +D P DD ++WRKYGQK +KGS  PR YYKC+    CP +K VER+LD   +  + Y+G+HNH L
Sbjct:  245 ADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTH-PACPVKKKVERSLDG-QVTEIIYKGQHNHEL 307          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.306e-17
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  414 RVVRVPAVSLRLS---DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 650
            R +R P V ++ +   DI  D + WRKYGQK +KG+P+PR YYKC++  GC  RKHVERA  D   ++ TYEG+HNH +  A
Sbjct:  468 RAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTA-PGCTVRKHVERASHDLKSVITTYEGKHNHDVPAA 548          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.306e-17
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = -2
Query:  402 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRN 599
            D + WRKYGQK +KG+PHPR YY+C+S  GCP RKH+E A+++   +++TY+G HNH + V   R+
Sbjct:  332 DGYRWRKYGQKMVKGNPHPRNYYRCTSA-GCPVRKHIETAVENTKAVIITYKGVHNHDMPVPKKRH 396          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = -2
Query:  408 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADT 599
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R L+D S+L+ TYEG HNH L V  T
Sbjct:  236 DGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGAT 299          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  414 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 611
            D+  D + WRKYGQK +KG+PHPR YYKC++   C  RKHVERA  D   ++ TYEG+HNH +  A
Sbjct:  303 DLLDDGYRWRKYGQKVVKGNPHPRSYYKCTT-PNCTVRKHVERASTDAKAVITTYEGKHNHDVPAA 367          

HSP 2 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = -2
Query:  429 DIPPDD-FSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 611
            D P DD ++WRKYGQKPIKG  +PR YYKC+ V  CP +K VER+  D  +  + Y+G+H+H
Sbjct:  163 DKPADDGYNWRKYGQKPIKGCEYPRSYYKCTHV-NCPVKKKVERS-SDGQITQIIYKGQHDH 222          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = -2
Query:  423 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 611
            DI  D + WRKYGQK +KG+P+PR YYKC +  GC  RKHVERA  DP  ++ TYEG+H H +
Sbjct:  231 DILDDGYRWRKYGQKVVKGNPNPRSYYKC-TFTGCFVRKHVERAFQDPKSVITTYEGKHKHQI 292          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  423 SDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 614
            SD   D F WRKYGQK + G+ +PR YY+C+S   C ARKHVERA DDP   + TYEG+HNH L
Sbjct:  345 SDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSAN-CRARKHVERASDDPRAFITTYEGKHNHHL 407          

HSP 2 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = -2
Query:  426 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHS 599
            D ++WRKYGQK +KGS  PR YYKC+  + CP +K VER+++   +  + Y+GEHNHS
Sbjct:  166 DGYNWRKYGQKQVKGSECPRSYYKCTHPK-CPVKKKVERSVEG-QVSEIVYQGEHNHS 221          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = -2
Query:  414 VRVPAVSLRLSDIPP---DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 644
            +R   VS+R     P   D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D S+L+ TYEG HNH L  A
Sbjct:  295 MRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPA 374          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  408 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADT 599
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  DD S+L+ TYEG H+HSL ++ T
Sbjct:  228 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPLSAT 291          
The following BLAST results are available for this feature:
BLAST of CX296333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK16_ARATH1.824e-1748.98Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRKY3_ARATH2.382e-1744.44Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRKY2_ARATH5.306e-1750.00Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK32_ARATH5.306e-1751.52Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRKY9_ARATH1.182e-1657.81Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK58_ARATH2.633e-1654.55Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK26_ARATH2.633e-1657.14Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK44_ARATH3.439e-1659.38WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRKY6_ARATH4.492e-1650.00WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK72_ARATH4.492e-1656.25Probable WRKY transcription factor 72 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05139A05SK FerrChloL1 Citrus clementina cDNA clone C05139A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296333 ID=CX296333; Name=CX296333; organism=Citrus clementina; type=EST; length=654bp
GGTTAAGCTAAGTAATGAGGTGCTGCGCTTTTATTCAATCCTGGGAAACA
TAAGAACAAATCCAACATCTTCCCTAGCTTTTAGTTTCTAATTAACATTG
GAACACACAGTGCTTGGGTATAGAGACAGGTAGAGCTATACCAAGAGGAA
TCCCATATTATACAGACAGGGGAATGAACAAAATGAACCCAGAAATCTCC
TTCGAGACAGACAATTCCAAGCTGGGCTTCTGCTGAATTCTTAACTTTAA
AGCAAAAGCTAGCCAGCCAGACAGTTCCCTAGTTCTGTTAAATATAATAT
ATAATATTGCCACCACCGCTATGTAATTCCCCCCCTAACCAATGATCTAA
TTTCTCACGACTGGTTTTTTTGTTGCGTGTCTAAGAAGATTCCAGGATGA
GATTTCTAGTATCTGCAACAGAGAGTGAGTGATTGTGCTCGCCTTCGTAG
GTGACTACAAGCATCGATGGATCATCCAACGCTCTCTCCACGTGCTTGCG
TGCAGGGCAGCCTCTCACACTGCTGCACTTGTAGTAACCCCTCGGATGAG
GAGATCCTTTGATGGGTTTCTGTCCATACTTCCTCCACGAGAAATCATCA
GGTGGAATATCAGACAACCTTAAGCTTACAGCCGGAACCCTAACAACTCT
CTTC
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