CX296333

Overview
NameCX296333
Unique NameCX296333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -2
Query:  429 KRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCS--SVRGCPARKHVERALDDPSMLVVTYEGEHNH 653
            K+VV +PA+         D ++WRKYGQK I GS  PRGYY+C+     GC A K V+R+  D +ML +TY  EHNH
Sbjct: 1197 KKVVSIPAID------EGDLWTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAITYLSEHNH 1267          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = -2
Query:  429 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 611
            D+  D + WRKYGQK +K S HPR YY+C+    C  +K VER  +D  M++ TYEG HNH
Sbjct:  142 DVLDDGYKWRKYGQKVVKNSLHPRSYYRCTH-NNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK59_ARATH (Probable WRKY transcription factor 59 OS=Arabidopsis thaliana GN=WRKY59 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = -2
Query:  429 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 599
            D + WRKYG+KPI GSP PR Y+KCSS   C  +K +ER  ++P  ++ TYEG HNH
Sbjct:  110 DGYKWRKYGKKPITGSPFPRHYHKCSS-PDCNVKKKIERDTNNPDYILTTYEGRHNH 165          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = -2
Query:  429 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 611
            D+  D + WRKYGQK +K + HPR YY+C +   C  +K V+R   DP+++V TYEG HNH
Sbjct:  111 DVLDDGYRWRKYGQKSVKNNAHPRSYYRC-TYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 170          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = -2
Query:  393 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH-SLSVADTRNLIL 611
            D+  D F WRKYG+K +K + + R YYKCSS  GC  +K VER  DD + ++ TYEG HNH SLS      ++L
Sbjct:  107 DVMDDGFKWRKYGKKSVKNNINKRNYYKCSS-EGCSVKKRVERDGDDAAYVITTYEGVHNHESLSNVYYNEMVL 179          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = -2
Query:  429 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 599
            D + WRKYGQK IK SP+PR YYKC++   C A+K VER++D+ +  ++TYEG H H
Sbjct:  115 DGYKWRKYGQKSIKNSPNPRSYYKCTNPI-CNAKKQVERSIDESNTYIITYEGFHFH 170          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = -2
Query:  423 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 611
            DI  D + WRKYGQK +K +P PR YYKC+   GC  +K V+R   D  ++V TY+G H H++
Sbjct:   62 DILDDGYRWRKYGQKAVKNNPFPRSYYKCTE-EGCRVKKQVQRQWGDEGVVVTTYQGVHTHAV 123          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRKY1_DICDI (Probable WRKY transcription factor protein 1 OS=Dictyostelium discoideum GN=wrky1 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.953e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = -2
Query:  429 SLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 626
            S  +S+I  D + WRKYGQK +KGS HPR YYKC + +GC  RK VER + D +     Y+GEH H
Sbjct:  806 SNNISNIVSDGYQWRKYGQKNVKGSLHPRHYYKC-TFQGCNVRKQVER-IGDTNQNSTVYKGEHCH 869          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = -2
Query:  423 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 611
            DI  D + WRKYGQK +K +  PR YY+C +  GC  +K V+R   D  ++V TYEG H+H +
Sbjct:   64 DILDDGYRWRKYGQKAVKNNKFPRSYYRC-TYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHPI 125          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = -2
Query:  423 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVER-ALDDPSMLVVTYEGEHNHSL 599
            D   WRKYGQK  K +P PR YY+CS    CP RK V+R   ++ S  + TYEG H+H L
Sbjct:  204 DGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDHPL 263          
The following BLAST results are available for this feature:
BLAST of CX296333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK52_ARATH7.929e-1348.05Probable WRKY transcription factor 52 OS=Arabidops... [more]
WRK12_ARATH7.929e-1350.82Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK59_ARATH1.036e-1254.39Probable WRKY transcription factor 59 OS=Arabidops... [more]
WRK56_ARATH1.036e-1249.18Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK51_ARATH1.036e-1248.65Probable WRKY transcription factor 51 OS=Arabidops... [more]
WRK49_ARATH1.766e-1254.39Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK45_ARATH3.935e-1247.62Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRKY1_DICDI1.953e-1151.52Probable WRKY transcription factor protein 1 OS=Di... [more]
WRK75_ARATH9.693e-1146.03Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK36_ARATH9.693e-1150.00Probable WRKY transcription factor 36 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05139A05SK FerrChloL1 Citrus clementina cDNA clone C05139A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296333 ID=CX296333; Name=CX296333; organism=Citrus clementina; type=EST; length=654bp
GGTTAAGCTAAGTAATGAGGTGCTGCGCTTTTATTCAATCCTGGGAAACA
TAAGAACAAATCCAACATCTTCCCTAGCTTTTAGTTTCTAATTAACATTG
GAACACACAGTGCTTGGGTATAGAGACAGGTAGAGCTATACCAAGAGGAA
TCCCATATTATACAGACAGGGGAATGAACAAAATGAACCCAGAAATCTCC
TTCGAGACAGACAATTCCAAGCTGGGCTTCTGCTGAATTCTTAACTTTAA
AGCAAAAGCTAGCCAGCCAGACAGTTCCCTAGTTCTGTTAAATATAATAT
ATAATATTGCCACCACCGCTATGTAATTCCCCCCCTAACCAATGATCTAA
TTTCTCACGACTGGTTTTTTTGTTGCGTGTCTAAGAAGATTCCAGGATGA
GATTTCTAGTATCTGCAACAGAGAGTGAGTGATTGTGCTCGCCTTCGTAG
GTGACTACAAGCATCGATGGATCATCCAACGCTCTCTCCACGTGCTTGCG
TGCAGGGCAGCCTCTCACACTGCTGCACTTGTAGTAACCCCTCGGATGAG
GAGATCCTTTGATGGGTTTCTGTCCATACTTCCTCCACGAGAAATCATCA
GGTGGAATATCAGACAACCTTAAGCTTACAGCCGGAACCCTAACAACTCT
CTTC
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