CX296509

Overview
NameCX296509
Unique NameCX296509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DYN2_HUMAN (Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 5.560e-54
Identity = 111/220 (50.45%), Postives = 146/220 (66.36%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEI-TESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D E +I+ MI+ +I + S LILAVTPAN DLANSDAL++A   DP G RTIG+ITKLD+MD GTDAR++L  K++PLR GY+GVVNRSQ+DI   + I+ AL AE KFF S P Y  +ADR G P L K LNQ L  HI+  LP L+S++ S L+S+ KE   Y     +    +   LL ++ ++   F   +EG  +++ T ELSGGARI+ IF   F
Sbjct:  151 DIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIEGKKDIRAALAAERKFFLSHPAYRHMADRMGTPHLQKTLNQQLTNHIRESLPALRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHERF 370          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 9.483e-54
Identity = 109/220 (49.55%), Postives = 148/220 (67.27%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEI-TESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D E +IR MIM +I + +CLILAVTPAN+DLANSDAL++A   DP G RTIG+ITKLD+MD GTDAR++L  K++PLR GYVGVVNRSQ+DI   + IK A++AE KFF S P Y  +ADR G P L K LNQ L  HI+  LP  ++++   L+S+  E  ++     E    +   LL ++ +++  F   +EG  +++ T ELSGGA+I+ IF   F
Sbjct:  151 DIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERF 370          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.483e-54
Identity = 109/220 (49.55%), Postives = 148/220 (67.27%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEI-TESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D E +IR MIM +I + +CLILAVTPAN+DLANSDAL++A   DP G RTIG+ITKLD+MD GTDAR++L  K++PLR GYVGVVNRSQ+DI   + IK A++AE KFF S P Y  +ADR G P L K LNQ L  HI+  LP  ++++   L+S+  E  ++     E    +   LL ++ +++  F   +EG  +++ T ELSGGA+I+ IF   F
Sbjct:  151 DIEYQIRDMIMQFITRENCLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKLQGQLLSIEHEVEAFKNFKPEDPTRKTKALLQMVQQFAVDFEKRIEGSGDQVDTLELSGGAKINRIFHERF 370          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DYN2_RAT (Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.483e-54
Identity = 111/220 (50.45%), Postives = 146/220 (66.36%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEI-TESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D E +I+ MI+ +I + S LILAVTPAN DLANSDAL++A   DP G RTIG+ITKLD+MD GTDAR++L  K++PLR GY+GVVNRSQ+DI   + I+ AL AE KFF S P Y  +ADR G P L K LNQ L  HI+  LP L+S++ S L+S+ KE   Y     +    +   LL ++ ++   F   +EG  +++ T ELSGGARI+ IF   F
Sbjct:  151 DIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIEGRKDIRAALAAERKFFLSHPAYRHMADRMGTPHLQKTLNQQLTNHIRESLPTLRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHERF 370          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DYN2_MOUSE (Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 9.483e-54
Identity = 111/220 (50.45%), Postives = 146/220 (66.36%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEI-TESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D E +I+ MI+ +I + S LILAVTPAN DLANSDAL++A   DP G RTIG+ITKLD+MD GTDAR++L  K++PLR GY+GVVNRSQ+DI   + I+ AL AE KFF S P Y  +ADR G P L K LNQ L  HI+  LP L+S++ S L+S+ KE   Y     +    +   LL ++ ++   F   +EG  +++ T ELSGGARI+ IF   F
Sbjct:  151 DIEYQIKDMILQFISRESSLILAVTPANMDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIEGKKDIRAALAAERKFFLSHPAYRHMADRMGTPHLQKTLNQQLTNHIRESLPTLRSKLQSQLLSLEKEVEEYKNFRPDDPTRKTKALLQMVQQFGVDFEKRIEGSGDQVDTLELSGGARINRIFHERF 370          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.239e-53
Identity = 99/220 (45.00%), Postives = 153/220 (69.55%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQ-GALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D EA+ R++IM YI +P+ +ILAV+PAN D+ NS+ L++A   DP G RTIG++TKLD+MD+GT+A ++L G+V PL+LG+V  VNRSQ DI+ ++S++DAL +E  FF   P Y  + DRCG P LAK L+ +LV HI+  LP +K+R+S+ +    ++  +YG+   S   Q G +LL  +++++  F   ++G +  + T ELSGGAR++ IF ++F
Sbjct:  185 DIEAQTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLARSVDPKGKRTIGVLTKLDLMDQGTNAMDILSGRVYPLKLGFVATVNRSQSDIVSHKSMRDALQSERSFFEHHPAYRTIKDRCGTPYLAKTLSNLLVSHIRERLPDIKARLSTLISQTQQQLNNYGDFKLSDQSQRGIILLQAMNRFANTFIASIDGNSSNIPTKELSGGARLYSIFNNVF 404          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.707e-53
Identity = 104/219 (47.49%), Postives = 150/219 (68.49%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D E +IR M++ YI + + +ILAV  AN+DLANSD L++A   DP+G RTIG++TK+D+MD+GTD  ++L G+VIPLRLGYV V+NR Q+DI   +SI+ AL AE  FF + P Y   A  CG P LA+KLN IL+ HI+  LP +K RI++AL     E  S G+         +++LN+++ +   +  +V+G++EE+S +ELSGGARI ++F  IF
Sbjct:  168 DIEKQIREMVLKYISKNNAIILAVNAANTDLANSDGLKLAREVDPEGLRTIGVLTKVDLMDKGTDVVDILAGRVIPLRLGYVPVINRGQKDIEGKKSIRIALEAERNFFETHPSYGSKAQYCGTPFLARKLNMILMHHIRNTLPEIKVRINAALAKYQAELHSLGD--TPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSATELSGGARIAFVFHEIF 384          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.796e-52
Identity = 98/219 (44.75%), Postives = 152/219 (69.41%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D E +I+ M++ YI +P+ +IL+V  AN+DLANSD L++A   DP+G RTIG++TK+D+MD+GTD  ++L G+VIPLR GY+ V+NR Q+DI   ++I++AL  E KFF + P Y+  A  CG P LAKKLN IL+ HI+  LP +K++I + L     E  + G  T   A   +++L++++ +S  ++ +++G+ +E+S+ ELSGGARI Y+F   F
Sbjct:  193 DIERQIKDMLLKYISKPNAIILSVNAANTDLANSDGLKLAREVDPEGTRTIGVLTKVDLMDQGTDVIDILAGRVIPLRYGYIPVINRGQKDIEHKKTIREALENERKFFENHPSYSSKAHYCGTPYLAKKLNSILLHHIRQTLPEIKAKIEATLKKYQNELINLGPETMDSA--SSVVLSMITDFSNEYAGILDGEAKELSSQELSGGARISYVFHETF 409          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 5.753e-51
Identity = 104/217 (47.93%), Postives = 144/217 (66.36%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAG-QGALLLNILSKYSEAFSXMVEGKNEEM-STSELSGGARIHYIF 651
            D E +I+ MI  +I++ +CLILAVTPAN+DLANSDAL++A   DP G RTIG+ITKLD+MD GTDAR++L  K++PLR GY+GVVNRSQ+DI   + I  AL AE KFF S P Y  +ADR G P L + LNQ L  HI+  LPGL+ ++   ++++ KE   +       A  +   +L ++ +    F   +EG    + +T+ELSGGA+I+ IF
Sbjct:  146 DIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIEGRKDIHQALAAERKFFLSHPSYRHMADRLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQMLTLEKEVEEFKHFQPGDASIKTKAMLQMIQQLQSDFERTIEGSGSALVNTNELSGGAKINRIF 362          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.085e-49
Identity = 101/220 (45.91%), Postives = 146/220 (66.36%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE-ITESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSELSGGARIHYIFQSIF 663
            D E +I++MI+ YI  P+ +ILA+TPAN D+  SDAL++A   DP G RTIG++TKLD+MD+GTDA ++LLG  IPL LG+VGVVNRSQ+DI   + I+  L  E K+F   PVY+ + ++ G   LA+K N+IL +HI+   P +K++I   +     +   YGE I    A +  LLL+IL+++S  +   ++G NEE+  +E +GGARI YIF   F
Sbjct:  305 DIEEKIKSMIIDYISNPNSIILAITPANQDIVTSDALKLAQQVDPLGKRTIGVLTKLDLMDKGTDAIDILLGNSIPLSLGFVGVVNRSQQDINNRKPIEQMLADEWKWFDQHPVYHRITNQLGTKYLAQKCNKILTKHIRDTFPSVKNQIRQLIKKYESDLEKYGEPIPLRSAEKSRLLLDILNEFSRKYRADLDGTNEELILNEFNGGARIRYIFSKAF 524          
The following BLAST results are available for this feature:
BLAST of CX296509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
DYN2_HUMAN5.560e-5450.45Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2[more]
DYN3_RAT9.483e-5449.55Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2[more]
DYN3_MOUSE9.483e-5449.55Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1[more]
DYN2_RAT9.483e-5450.45Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1[more]
DYN2_MOUSE9.483e-5450.45Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2[more]
YB68_SCHPO1.239e-5345.00Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
VPS1_SCHPO4.707e-5347.49Vacuolar protein sorting-associated protein 1 OS=S... [more]
VPS1_YEAST6.796e-5244.75Vacuolar protein sorting-associated protein 1 OS=S... [more]
DYN_DROME5.753e-5147.93Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
DYNB_DICDI1.085e-4945.91Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC05142A12SK FerrChloL1 Citrus clementina cDNA clone C05142A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296509 ID=CX296509; Name=CX296509; organism=Citrus clementina; type=EST; length=663bp
GAGGCTGATACTGAAGCACGAATTAGAACGATGATTATGTCATATATCAA
GCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAGATTTGG
CAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGATGGTTAT
AGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGGTACTGA
TGCCCGTAATTTGTTACTCGGAAAAGTGATTCCGCTTCGGCTTGGTTATG
TTGGTGTTGTGAATAGGAGTCAGGAGGATATTATGTTCAACCGGAGTATC
AAGGATGCACTAGTGGCTGAGGAAAAGTTCTTCCGTAGTCGCCCTGTATA
TAATGGTCTAGCAGATCGTTGTGGTGTTCCTCAGTTGGCAAAGAAGTTGA
ACCAGATTCTTGTACAACATATCAAGGCTATACTTCCTGGGTTGAAGTCA
CGCATTAGCTCTGCATTAGTTTCTGTTGCAAAGGAGCATGCAAGCTACGG
GGAAATCACAGAATCAAAGGCTGGTCAGGGAGCTCTACTCCTGAATATTC
TTTCTAAATACTCCGAAGCATTTTCTTNCATGGTGGAGGGAAAGAATGAA
GAAATGTCAACATCTGAGCTTTCTGGCGGGGCACGAATTCACTATATTTT
TCAGTCAATCTTT
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