CX296509

Overview
NameCX296509
Unique NameCX296509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX1_MOUSE (Interferon-induced GTP-binding protein Mx1 OS=Mus musculus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 66/202 (32.67%), Postives = 119/202 (58.91%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            AD   +I+ +I +YI++   + L V P+N D+A ++AL +A   DP+G RTIG++TK D++DRG + +  +++   V PL+ GY+ V  R Q+DI    S+ +A   E+ FF+    ++ L +  +  VP LA++L + L  HI   LP L+ +I+S+  S ++E   YG +I E    + + L+N +S ++     +++ +
Sbjct:  158 ADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGVLTKPDLVDRGAEGKVLDVMRNLVYPLKKGYMIVKCRGQQDIQEQLSLTEAFQKEQVFFKDHSYFSILLEDGKATVPCLAERLTEELTSHICKSLPLLEDQINSSHQSASEELQKYGADIPEDDRTRMSFLVNKISAFNRNIMNLIQAQ 359          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX1_HUMAN (Interferon-induced GTP-binding protein Mx1 OS=Homo sapiens GN=MX1 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24
Identity = 66/202 (32.67%), Postives = 120/202 (59.41%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            AD   +I+T+I  YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++D+GT+ +  +++   V  L+ GY+ V  R Q++I    S+ +AL  E+ FF + P +  L +  +  VP LA+KL   L+ HI   LP L+++I      + +E   YG +I E +  +   L++ ++ +++  + +++G+
Sbjct:  192 ADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGE 393          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX1_RAT (Interferon-induced GTP-binding protein Mx1 OS=Rattus norvegicus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.590e-24
Identity = 72/210 (34.29%), Postives = 123/210 (58.57%), Query Frame = 1
Query:    4 ADTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGKNEEMSTSE 618
            AD E +I+ +I  YI++   + L V P+N D+A ++AL++A   DP G RTIGI+TK D++DRGT+ +  +++   V  L+ GY+ V  R Q+DI    S+ +AL  E+ FF+  P +  L +  +  VP LAK+L   L  HI   LP L+++I+      ++E   YG +I E  + + + L+N ++ +++    +V+ + E +S  E
Sbjct:  183 ADIEHKIKRLITEYIQKQETINLVVVPSNVDIATTEALKMAQEVDPQGDRTIGILTKPDLVDRGTEDKVVDVVRNLVCHLKKGYMIVKCRGQQDIQEQLSLAEALQKEQVFFKEHPQFRVLLEDGKATVPCLAKRLTMELTSHICKSLPILENQINVNHQIASEELQKYGADIPEDDSKRLSFLMNKINVFNKDILSLVQAQ-ENISWEE 391          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX1_MACMU (Interferon-induced GTP-binding protein Mx1 OS=Macaca mulatta GN=MX1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 64/201 (31.84%), Postives = 119/201 (59.20%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            D   +I+T+I  YI++   + L V P+N D+A ++AL +A   DP+G RTIGI+TK D++D+GT+ +  +++   V  L+ GY+ V  R Q++I    S+ +AL  E+ FF   P +  L +  +  +P LA+KL   L+ HI   LP L+++I  +   + +E   YG +I E +  +   L++ ++ +++  + +++G+
Sbjct:  193 DIGYKIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFEDHPHFRDLLEEGKATIPCLAEKLTSELIAHICKSLPLLENQIKESHQGITEELQKYGVDIPEDENEKMFFLIDKINAFNQDITALIQGE 393          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MXA_DANRE (Interferon-induced GTP-binding protein MxA OS=Danio rerio GN=mxa PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 65/206 (31.55%), Postives = 119/206 (57.77%), Query Frame = 1
Query:   19 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADR--CGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESK-AGQGALLLNILSKYSEAFSXMVEGKNEEMSTSEL 621
            +I+ +I  ++ +   + L V P N D+A ++ALQ+A   DPDG RT+GI+TK D++D+GT+    +++  +VI L  GY+ V  R Q++IM   ++ +A   E  FF+  P ++ L +     +P+LA+KL   LV HI+  LP L+ +I + L    KE  +YG    S+ A + +  ++ ++ +++    +  G++ + +T  L
Sbjct:  164 QIKRLIRKFVTRQETINLVVVPCNVDIATTEALQMAQAEDPDGERTLGILTKPDLVDKGTEGTVVDIVHNEVIHLTKGYMIVRCRGQKEIMDQVTLNEATETESAFFKDHPHFSKLYEEGFATIPKLAEKLTIELVHHIQKSLPRLEEQIETKLAETQKELEAYGNGPPSEPAARLSFFIDKVTAFNQDMLNLTTGEDVKCTTDLL 369          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX2_HUMAN (Interferon-induced GTP-binding protein Mx2 OS=Homo sapiens GN=MX2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 66/201 (32.84%), Postives = 111/201 (55.22%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADR--CGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            D   +I+ +I  YI++   + L V P N D+A ++AL +A   DP+G RTIGI+TK D+MDRGT+    N++     PL+ GY+ V  R Q++I    S+ +A   E  FF++ P +  L +     VP+LA++L   L+ HI+  LP L+ +I  +     +E    G +I   +A +   L+  +  +++    +VEG+
Sbjct:  240 DIGLQIKALIKKYIQRQQTINLVVVPCNVDIATTEALSMAHEVDPEGDRTIGILTKPDLMDRGTEKSVMNVVRNLTYPLKKGYMIVKCRGQQEITNRLSLAEATKKEITFFQTHPYFRVLLEEGSATVPRLAERLTTELIMHIQKSLPLLEGQIRESHQKATEELRRCGADIPSQEADKMFFLIEKIKMFNQDIEKLVEGE 440          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX2_BOVIN (Interferon-induced GTP-binding protein Mx2 OS=Bos taurus GN=MX2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 68/207 (32.85%), Postives = 108/207 (52.17%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGA-LLLNILSKYSEAFSXMVEGKNEEMST 612
            D   +I+ +I  YI++   + L V P N D+A ++AL +A   DPDG RTIGI+TK D++D+GT+     ++      L+ GY+ V  R Q+DI    S+ +A   E  FF + P +  L D  +  VP LA++L   L+ HI   LP L+++I        +E   YG+   S  G     L+  +  ++E    ++EG+   M T
Sbjct:  236 DIGLQIKALIKKYIQRQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDKGTEKGVLKVMQNLTYHLKKGYMIVKCRGQQDITNKLSLAEATRKETMFFETHPYFRILLDEGKATVPLLAERLTTELIWHINKSLPLLENQIKEKHQRATEELQQYGDDIPSDEGDKMFFLIEKIKVFNEDIGKLIEGEEIVMET 442          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MXB_DANRE (Interferon-induced GTP-binding protein MxB OS=Danio rerio GN=mxb PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 60/166 (36.14%), Postives = 99/166 (59.64%), Query Frame = 1
Query:   19 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADR--CGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGE 504
            +I+ +I  +I +   + L V P N D+A ++ALQ+A   DP+G RT+GI+TK D++D+GT+    +++  +VI L  GY+ V  R Q++IM   ++ +A   E  FF+  P +  L +     +P+LA+KL   LV HI+  LP L+ +I + L    KE  +YG+
Sbjct:  164 QIKRLIRMFITKQETINLVVVPCNVDIATTEALQMAQAEDPEGERTLGILTKPDLVDKGTEGTVVDIVHNEVIHLTKGYMIVRCRGQKEIMDQVTLNEATETESAFFKDHPHFRKLYEEGFATIPKLAEKLTIELVHHIQRSLPRLEDQIQTKLAETQKELEAYGD 329          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX2_SHEEP (Interferon-induced GTP-binding protein Mx2 OS=Ovis aries GN=MX2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 67/207 (32.37%), Postives = 110/207 (53.14%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGA-LLLNILSKYSEAFSXMVEGKNEEMST 612
            D   +I+ +I +YI++   + L V P N D+A ++AL +A   DPDG RTIGI+TK D++D+GT+     ++      L+ GY+ V  R Q+DI    S+ +A   E  FF++ P +  L D  +  VP LA++L   L+ HI   LP L+++I        +E   YG+   S  G     L+  +  ++E    ++EG+   + T
Sbjct:  239 DIGLQIKALIKTYIQRQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPDLVDKGTEKGVLKVMQNLTYHLKKGYMIVKCRGQQDITNKLSLAEATRKEVMFFQTHPYFRVLLDEGKATVPLLAERLTTELIWHINKSLPLLENQIKEKHQRATEELQQYGDDIPSNEGDKMFFLIEKIKLFNEDIEKLIEGEEIVIET 445          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX2_MACMU (Interferon-induced GTP-binding protein Mx2 OS=Macaca mulatta GN=MX2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 65/201 (32.34%), Postives = 111/201 (55.22%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADR--CGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYG-EITESKAGQGALLLNILSKYSEAFSXMVEGK 594
            D   +I+ +I  YI++   + L V P N D+A ++AL +A   DP+G RTIGI+TK D+MDRGT+    N++     PL+ GY+ V  R Q++I+   S+ +A   E  FF++ P +  L +     VP+LA++L   L+ HI+  LP L+ +I  +     +E    G +I    A +   L+  +  +++    ++EG+
Sbjct:  240 DIGLQIKALIKRYIQRQQTINLVVVPCNVDIATTEALSMAHEVDPEGDRTIGILTKPDLMDRGTEKSIINVVRNLTYPLKKGYMIVKCRGQQEIINRLSLAEATKKEITFFQTHPCFRVLLEEGSATVPRLAERLTAELITHIQKSLPLLEEQIRESHQKATEELRRCGADIPSQDADKMFFLIEKIKMFNQDIEKLIEGE 440          
The following BLAST results are available for this feature:
BLAST of CX296509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MX1_MOUSE2.691e-2432.67Interferon-induced GTP-binding protein Mx1 OS=Mus ... [more]
MX1_HUMAN3.515e-2432.67Interferon-induced GTP-binding protein Mx1 OS=Homo... [more]
MX1_RAT4.590e-2434.29Interferon-induced GTP-binding protein Mx1 OS=Ratt... [more]
MX1_MACMU1.023e-2331.84Interferon-induced GTP-binding protein Mx1 OS=Maca... [more]
MXA_DANRE1.744e-2331.55Interferon-induced GTP-binding protein MxA OS=Dani... [more]
MX2_HUMAN5.075e-2332.84Interferon-induced GTP-binding protein Mx2 OS=Homo... [more]
MX2_BOVIN1.131e-2232.85Interferon-induced GTP-binding protein Mx2 OS=Bos ... [more]
MXB_DANRE1.477e-2236.14Interferon-induced GTP-binding protein MxB OS=Dani... [more]
MX2_SHEEP1.477e-2232.37Interferon-induced GTP-binding protein Mx2 OS=Ovis... [more]
MX2_MACMU1.477e-2232.34Interferon-induced GTP-binding protein Mx2 OS=Maca... [more]

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Properties
Property NameValue
Genbank descriptionC05142A12SK FerrChloL1 Citrus clementina cDNA clone C05142A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296509 ID=CX296509; Name=CX296509; organism=Citrus clementina; type=EST; length=663bp
GAGGCTGATACTGAAGCACGAATTAGAACGATGATTATGTCATATATCAA
GCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAGATTTGG
CAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGATGGTTAT
AGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGGTACTGA
TGCCCGTAATTTGTTACTCGGAAAAGTGATTCCGCTTCGGCTTGGTTATG
TTGGTGTTGTGAATAGGAGTCAGGAGGATATTATGTTCAACCGGAGTATC
AAGGATGCACTAGTGGCTGAGGAAAAGTTCTTCCGTAGTCGCCCTGTATA
TAATGGTCTAGCAGATCGTTGTGGTGTTCCTCAGTTGGCAAAGAAGTTGA
ACCAGATTCTTGTACAACATATCAAGGCTATACTTCCTGGGTTGAAGTCA
CGCATTAGCTCTGCATTAGTTTCTGTTGCAAAGGAGCATGCAAGCTACGG
GGAAATCACAGAATCAAAGGCTGGTCAGGGAGCTCTACTCCTGAATATTC
TTTCTAAATACTCCGAAGCATTTTCTTNCATGGTGGAGGGAAAGAATGAA
GAAATGTCAACATCTGAGCTTTCTGGCGGGGCACGAATTCACTATATTTT
TCAGTCAATCTTT
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