CX296509

Overview
NameCX296509
Unique NameCX296509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX2_ICTPU (Interferon-induced GTP-binding protein Mx2 OS=Ictalurus punctatus GN=mx2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 56/172 (32.56%), Postives = 93/172 (54.07%), Query Frame = 1
Query:   25 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDAR--NLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQ 528
            + +I  +I +   + L V P N D+A ++AL++A   DP+G RT G++TK D++D+G++    +++  +++ L  GY+ V  R Q++I    S+ + +  E  FF   P +  L D  +  +P LA+KL   LV HI   LP L+ RI   L     E   YG  T ++  Q
Sbjct:  161 KRLIKKFITKQETINLVVVPCNVDIATTEALKMALEVDPNGERTFGVLTKPDLVDKGSEETVVSIINNEIVYLNKGYIIVRCRGQQEIKDRVSLNETVKRERDFFEDHPHFRTLYDNRKATIPNLAEKLTLELVFHIGRCLPRLEERIQVKLSETQAELDRYGSGTPTEPEQ 332          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MX2_BUBBU (Interferon-induced GTP-binding protein Mx2 OS=Bubalus bubalis GN=MX2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 66/210 (31.43%), Postives = 107/210 (50.95%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKAGQGA-LLLNILSKYSEAFSXMVEGKNEEMST 612
            D   +I+ +I   I++   + L V P N D+A    ++AL +A   DPDG RTIGI+TK D++D+GT+     ++      L+ GY+ V  R Q+DI    S+ +A   E  FF + P +  L D  +  +P LA++L   L+ HI   LP L+++I        +E   YG+   S  G     L+  +  ++E    ++EG+   M T
Sbjct:  236 DIGLQIKALI---IQRQETINLVVVPCNVDIATKKYTEALSMAQEVDPDGDRTIGILTKPDLVDKGTEKGVLKVMQNLTYHLKKGYMIVKCRGQQDITNKLSLAEATRKETMFFETHPYFRVLLDEGKATMPLLAERLTTELIWHINKSLPLLENQIKEKHQRATEELQQYGDDIPSDEGDKMFFLIEKIKVFNEDIGKLIEGEEIVMET 442          
BLAST of CX296509 vs. ExPASy Swiss-Prot
Match: MGM1_YEAST (Dynamin-like GTPase MGM1, mitochondrial OS=Saccharomyces cerevisiae GN=MGM1 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    7 DTEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 282
            + + +IR +   Y+  P+ +ILA++ A+ DLANS AL+ +  ADP G RTIG+ITKLD++D    AR++L  K  PL +GYVGV+ ++   I
Sbjct:  332 ELKTKIRDLCEKYLTAPN-IILAISAADVDLANSSALKASKAADPKGLRTIGVITKLDLVD-PEKARSILNNKKYPLSMGYVGVITKTPSSI 421          
The following BLAST results are available for this feature:
BLAST of CX296509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MX2_ICTPU9.905e-1932.56Interferon-induced GTP-binding protein Mx2 OS=Icta... [more]
MX2_BUBBU1.690e-1831.43Interferon-induced GTP-binding protein Mx2 OS=Buba... [more]
MGM1_YEAST9.594e-1444.57Dynamin-like GTPase MGM1, mitochondrial OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionC05142A12SK FerrChloL1 Citrus clementina cDNA clone C05142A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296509 ID=CX296509; Name=CX296509; organism=Citrus clementina; type=EST; length=663bp
GAGGCTGATACTGAAGCACGAATTAGAACGATGATTATGTCATATATCAA
GCAACCAAGTTGTCTAATTCTTGCAGTTACACCGGCAAATTCAGATTTGG
CAAACTCAGATGCCCTTCAAATTGCTGGAATTGCTGATCCGGATGGTTAT
AGAACCATAGGCATAATCACAAAGTTGGATATTATGGACAGAGGTACTGA
TGCCCGTAATTTGTTACTCGGAAAAGTGATTCCGCTTCGGCTTGGTTATG
TTGGTGTTGTGAATAGGAGTCAGGAGGATATTATGTTCAACCGGAGTATC
AAGGATGCACTAGTGGCTGAGGAAAAGTTCTTCCGTAGTCGCCCTGTATA
TAATGGTCTAGCAGATCGTTGTGGTGTTCCTCAGTTGGCAAAGAAGTTGA
ACCAGATTCTTGTACAACATATCAAGGCTATACTTCCTGGGTTGAAGTCA
CGCATTAGCTCTGCATTAGTTTCTGTTGCAAAGGAGCATGCAAGCTACGG
GGAAATCACAGAATCAAAGGCTGGTCAGGGAGCTCTACTCCTGAATATTC
TTTCTAAATACTCCGAAGCATTTTCTTNCATGGTGGAGGGAAAGAATGAA
GAAATGTCAACATCTGAGCTTTCTGGCGGGGCACGAATTCACTATATTTT
TCAGTCAATCTTT
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