CX296514

Overview
NameCX296514
Unique NameCX296514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296514_ssr404 microsatellite CX296514_ssr404:404..424. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  439 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            K Y+GVR R WG + +EIR PN+K +R+WLG++ TA  AA+AYD +   L+G +A LNFP
Sbjct:   48 KKYKGVRMRSWGSWVSEIRAPNQK-TRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFP 106          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  430 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            +  + +RGVR+R WG + +EIR P  K  RVWLGTF+TA  AA+AYD +A  + G  A  NFP+
Sbjct:    2 VHSRKFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            YRGVR+R WG++ AEIR+P+  G+R+WLGTF ++ EAA AYD +A  + G  A LN P
Sbjct:   72 YRGVRQRRWGKWVAEIREPDG-GARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLP 128          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  433 EEKH--YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            E +H  YRGVR+R  G++ +E+R+PN+K +R+WLGTF TA  AA+A+D +A  LRG  A LNF
Sbjct:   42 ETRHPIYRGVRQRNSGKWVSEVREPNKK-TRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  436 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            +  Y+GVR+R WG++ +EIR PN +  R+WLG++DT  +AA+A+D + + LRG+ A  NFP
Sbjct:    9 QSKYKGVRKRKWGKWVSEIRLPNSR-ERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFP 68          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFPL 621
            Y GVR+R WG++ AEIR+P R G+++WLGTF ++ EAA AYD ++  + G  A LN PL
Sbjct:   67 YTGVRQRTWGKWVAEIREPGR-GAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLPL 124          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  445 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNFP 618
            Y GVR+R WG++ AEIR PN +  R+WLG+FD+A +AA+A+D + + LRG  A  NFP
Sbjct:    7 YTGVRKRKWGKWVAEIRLPNSR-DRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFP 63          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  433 EEKH--YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            E +H  YRGVR+R  G++  E+R+PN+K +R+WLGTF TA  AA+A+D +A  LRG  A LNF
Sbjct:   45 ETRHPIYRGVRQRNSGKWVCELREPNKK-TRIWLGTFQTAEMAARAHDVAAIALRGRSACLNF 106          
BLAST of CX296514 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  433 EEKH--YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNSAFRLRGSKAILNF 615
            E +H  YRGVR+R  G++  E+R+PN+K SR+WLGTF T   AA+A+D +A  LRG  A LNF
Sbjct:   48 ETRHPIYRGVRQRNSGKWVCEVREPNKK-SRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109          
The following BLAST results are available for this feature:
BLAST of CX296514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF12_ARATH3.381e-1153.33Ethylene-responsive transcription factor ERF012 OS... [more]
SHN2_ARATH4.415e-1150.00Ethylene-responsive transcription factor SHINE 2 O... [more]
DRE2C_ARATH4.415e-1155.17Dehydration-responsive element-binding protein 2C ... [more]
DRE1B_ARATH4.415e-1153.97Dehydration-responsive element-binding protein 1B ... [more]
ERF17_ARATH5.767e-1147.54Ethylene-responsive transcription factor ERF017 OS... [more]
DRE2H_ARATH5.767e-1152.54Putative dehydration-responsive element-binding pr... [more]
ERF16_ARATH7.531e-1153.45Ethylene-responsive transcription factor ERF016 OS... [more]
DRE1C_ARATH7.531e-1153.97Dehydration-responsive element-binding protein 1C ... [more]
DRE1D_ARATH9.836e-1153.97Dehydration-responsive element-binding protein 1D ... [more]

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Properties
Property NameValue
Genbank descriptionC05142C04SK FerrChloL1 Citrus clementina cDNA clone C05142C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296514 ID=CX296514; Name=CX296514; organism=Citrus clementina; type=EST; length=661bp
GAGGCATTTACCTTTCATCTTACCTTCAATATGGCATCTCTGAATGAAGC
ATCAACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTCA
CTTCTTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCT
CAAAGCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAAC
AGTTACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTT
CAAGCACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATA
CCCCAAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGA
TGCTGATAACCCAGTTGCTGTGAAAAATAAAGATCCGGATGCTGCTGCTG
ATGATAATAATAATAATAATAATAACAATATTGAGGAAAAGCATTACAGA
GGAGTAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCC
GAATAGAAAAGGGAGCCGGGTTTGGCTTGGAACTTTTGATACTGCCGTTG
AAGCCGCCAAAGCTTATGACAACTCTGCGTTTAGGCTGCGTGGAAGCAAA
GCGATATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTGGATTCTAAAGT
GGAAGTTGACC
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